Pseudomonas brassicacearum DF41: CD58_28100
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Entry
CD58_28100 CDS
T03174
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CD58_28100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_28100
Enzymes [BR:
pbc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CD58_28100
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CD58_28100
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CD58_28100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AHL36496
LinkDB
All DBs
Position
complement(6271537..6272349)
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AA seq
270 aa
AA seq
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MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PLNHELLIRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGGISRARYLKLAIEIKRILAHAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGELCKVCGTGLREIRLGQRASVWCPRCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgccggaagtcgaaaccacccgccgcggaatcgcgccccaccttgaaggc
cagcgggtcagtcgcgtggtggtacgtgaccgccgcctgcgctggccgattccggaagac
ctcgatgtgcggctttcggggcaacgcattgtgctggtggagcgacgggccaagtacctg
ctgatcaatgccgaagttggcaccttgatcagccatttgggcatgtccggcaacctgcgg
ttggtggaagtcggcatgcccgccgccaagcacgagcacgtggacatcgagctggaatcc
ggcctggccttgcgctacaccgacccgcggcgctttggggcgatgctctggagcctcgac
ccgctcaaccatgaactgctgatccgcctcgggccggaaccgttgaccgatctgttcgac
ggcgaacgtctgttccagctctcgcgtggccgctccatggcggtcaagcctttcatcatg
gacaacgcggtggtggtgggcgtgggcaacatttatgcgaccgaggcgctgttcgccgcc
ggcatcgacccgcgtcgggcggccggaggtatttcccgggcgcgttacctgaagctggcg
atcgagatcaaacgcatcctcgcccacgccatcgagcgcggcggtaccacgctgcgtgat
ttcatcggtggcgatggccagcccggctacttccagcaggaattgttcgtctacggtcgg
ggcggtgagctgtgtaaggtttgtggcacggggctgcgggaaatccgcctgggccagcgc
gccagtgtctggtgtccgcgctgtcagagctga
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