Pseudomonas brassicacearum DF41: CD58_28455
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Entry
CD58_28455 CDS
T03174
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD58_28455 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbc03021
]
CD58_28455 (rho)
03019 Messenger RNA biogenesis [BR:
pbc03019
]
CD58_28455 (rho)
Transcription machinery [BR:
pbc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CD58_28455 (rho)
Messenger RNA biogenesis [BR:
pbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CD58_28455 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AHL36566
UniProt:
A0AAW8MG27
LinkDB
All DBs
Position
complement(6350078..6351337)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggctttctccgctctgcagacgcttcctatctcgccggcccagacgatatctac
gtttcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgacaccatcaac
ttcgaccgtccggaaaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccaccgaagacctcaccggtcgt
gtcatcgacctgtgcgcacccatcggcaaaggccagcgcggtctgatcgtggcgccgccg
aaggcgggcaagacgatcatgctgcagaacatcgcggccaacatcgcccgtaacaaccct
gaagttcatctgatcgtgctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgacgttcgacgaaccgccgacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctggattccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgatgcccacgccctggaaaagcccaagcgtttc
ttcggcgccgcgcgcaacatcgaagaaggcggttcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaagatggatgaagtgatctacgaggaattcaagggcaccggcaac
atggaactgcctctggatcgcaagatcgccgaaaagcgcgtcttcccggccatcaacatc
aaccgttccggcacccgccgcgaagagttgctgaccgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcatccgatggacgaagtcgctgccatcgagttcctggtc
gacaagctgaagcagaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa
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