Paenibacillus borealis: PBOR_00215
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Entry
PBOR_00215 CDS
T03324
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbd
Paenibacillus borealis
Pathway
pbd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBOR_00215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbd03400
]
PBOR_00215
Enzymes [BR:
pbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBOR_00215
DNA repair and recombination proteins [BR:
pbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PBOR_00215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_22
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIQ55576
UniProt:
A0A089L272
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All DBs
Position
41862..45386
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQGLIEAFSKDPDFQSVTSGIAAGMKEQLISGLSGSARQIMLAALHEETERPLLIVTHN
MFSAQKMAEDLQEALSPDRVLLYPANELVAAEAAVSSPETLAQRIDVLTKCAKGFRGVVV
VPYSGVRRLLPAPHVMAGAQLTVSQDGTLALDEFLMSMIEMGYDRVERVENRGELSVRGG
IIDFYPMTSPLAYRVELFDDEVDSIRTFDPIDQRSIDKVRSVKITPAKEIIADQLRQDAA
STAASALLERQLEKMSDRQAKLRLREEMGRELEMLREGTYFPEIYKYISLLYPERSHLYD
YMAQDTLLVLDEPARLLETAKQLERDESEWNLHLLQNGKTLPDLHLSVESDVIMYHRPFQ
SLFMSIFLRQVPHIQPQNILGFISRGMQDFHGQMNVLKSEMERWHKSGVKVIMLANGEER
MERVRRVLDDYGIEEPTILQGNLGSGFELPSIHLAVITEGEMFSQKQRKARKVSKGIDNA
ERIKSYTELKIGDYVVHQNHGIGKYMGIGTLEVSGIHRDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVTSKVRSSVQDIADDLIKLYAERQSALGYGFEKDTQ
EQREFEEMFPYEETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFANYPLNIQVLSRFRSRKEQNDTIKGVRQGTVDVVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLTREAVERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEARVGIGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIRKRKVTVLGEEDTSLKQGNTVIDLS
IDAYLPSEYIYDSIQKIEIYKKVAAVATFEDASELEDELLDRFGELPEAVINLLSVARLK
VFGKLYGMESMVRRGDEVSLNFHEGSIGAFDTAKLAKVGNSFERRVQFDKDAKATIRIKS
KDLGDKELLDLLEQFLAAAKQSLKSKGELHNVVK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaaggtcttatagaagctttttcgaaggatcccgattttcagtccgtcaccagc
ggtatcgccgcaggcatgaaggagcagcttatctccggcttatccggctcggccagacaa
attatgctggctgcgctgcatgaagagacggagcgtccgctgctaatagtaacccataat
atgttctcggcccagaagatggccgaggatttgcaggaagcgctttctccggaccgtgtg
ctgctctatccggccaatgagctggtggctgcagaagccgcagtctccagtcccgagaca
ctcgctcagcgcattgatgtgcttacgaaatgtgcgaagggcttccgtggagttgtagtt
gttccgtactccggcgtacggcggctgctccccgccccccatgtgatggccggggcccag
ctgacggtttcacaggacgggaccctcgcgctggatgaattcctcatgtccatgattgaa
atgggctatgaccgtgtcgagcgggtggagaaccgcggtgagctcagcgtgcgcggaggt
attattgatttctatcctatgacttctccactggcataccgggtggagctgtttgatgat
gaagtagactccatccgtacctttgaccccatagaccagcgctccattgataaggtccgc
agtgtgaagattactccggccaaggagattattgctgaccagcttcgtcaggatgcggct
tctacagctgcgtcggcgctgctggagcggcagctggagaaaatgagcgaccgtcaggcc
aagctgcgtctgcgtgaggaaatgggccgggagctggaaatgctgcgcgaaggcacttat
tttccggaaatctataaatatatcagtctcttatatcctgaacgctctcatctgtatgat
tacatggcgcaggataccctgcttgtgctggatgaaccggcccgattgctggaaaccgcg
aagcagctggaacgcgatgagtcggaatggaacctgcatttactgcagaacggcaaaacg
ctgcctgacctgcatctctccgtagagagcgacgtcattatgtatcaccgtccgttccag
agcttgttcatgtcgattttcctgcgtcaggttccgcatattcagccgcagaacattctg
ggcttcatcagccggggaatgcaggatttccatggccagatgaatgtgctgaaatccgag
atggaacgctggcataagtccggcgtgaaggtgattatgctggccaatggcgaggagcgg
atggagcgtgtccgccgggtgctggatgactatggaattgaagagccgaccattctccag
ggcaacctgggttccggttttgagcttccttcgattcatttggctgtcatcaccgaaggt
gagatgttctcgcagaagcagcgcaaggcacggaaggtctccaaggggatagataatgcc
gaacggattaagagctatacggagctgaagattggcgattatgtggttcaccagaaccac
gggatcggtaaatatatgggcatcggcacgcttgaggtcagcgggattcaccgcgactac
atgcatattctctatgccggaggcgacaagctctccgttccgattgaacagatcgatctg
attcagaaatatgtcggttcagaagacaaggagccgaaggtatataagcttggcggcaac
gagtggacgagggttaccagcaaagtacggagctcggtccaggatatcgccgatgatctg
atcaagctctacgctgaacgccagagcgcactcggttatggcttcgagaaggatacgcag
gaacagcgtgaattcgaagagatgttcccgtatgaggagacccgtgaccagctccgggcg
atcgaagagattaagaaggatatggagcagaaccgtccgatggaccgcctgctctgcgga
gatgtgggctacggtaagactgaagtggcgatccgtgccgcttttaaatcggccattgaa
ggcaaacaggtggctgtgctcgtgccaacgacgattctggcgcagcagcactatgaaacc
ttccgcgagcgcttcgccaattatccgttgaatattcaggtactgagccgtttccgtagc
cgtaaggagcagaatgacacgattaagggcgtaagacagggtaccgtggatgtggttata
ggcacacaccgtctgctgtcgcaggatctggtgttcaaggacctgggtctcctgattgtc
gatgaagagcagcgtttcggcgtgacccacaaagagaagctgaagaagctgaagactaat
gtcgatgtattgaccctgacggcaacaccgattccccgcactctgcatatgtcgatgctt
ggggtgcgggacttgtcagttattgagacaccaccagagaaccgctttcccgtacagacg
tatgtcgtggagcatagccagacccttacccgtgaagcggtagagcgtgagcttgcccgt
ggcggccaggtctattacctctacaaccgcgtccagggtattcaggaaatggctgcgcaa
atctccatgctggtgccggaagctagagtagggatcggccatgggcagatgtcggagtcg
gagctggagaagactatccttgatttcctggatggagagtacgatgtactggtcagcaca
agcattatcgagacgggcgtggatattccaaacgtcaatacgctgattgtgcatgatgcc
gataaaatgggactgtcccagctctatcagctgcgcggacgtgtgggccgctccaaccgg
attgcctatgcttatttcacgtaccagcgggataaggtgctgacagaagtggccgagaaa
cgcctgcagtcgattaaggaattcacggagctgggctcgggcttcaaaatcgccatgcga
gatctctctatccgcggagcaggcaatctgctcggtgcggagcagcacggattcatcgct
tcggtcggtttcgatctgtactcgcagatgctggccgaggaaatccgcaaacgtaaagtc
accgtccttggagaagaggatacttcgctgaaacagggcaataccgtgattgatttgtcg
attgacgcgtaccttccatccgagtatatttacgacagtatccaaaaaattgaaatctat
aaaaaagtcgctgcggtggctacgttcgaggatgcttcggagcttgaggatgagctgctt
gaccggttcggcgagttaccggaggccgtcatcaatctgctctctgtagcccggctgaag
gtgttcggcaagctgtatggtatggaatccatggtccggcggggcgatgaggtctcgctc
aatttccatgaaggaagtatcggtgcatttgatacggcgaagctcgccaaagttggaaat
agcttcgaaagacgtgtacaatttgataaggatgccaaagcaacgatccgcatcaagtcc
aaagacttgggcgacaaagagctgcttgatctgctggagcaattcctcgcggcagccaaa
cagtctttaaaatcgaagggagaattacacaatgtcgttaaataa
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