Paenibacillus borealis: PBOR_12625
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Entry
PBOR_12625 CDS
T03324
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbd
Paenibacillus borealis
Pathway
pbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBOR_12625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbd03019
]
PBOR_12625
03009 Ribosome biogenesis [BR:
pbd03009
]
PBOR_12625
Enzymes [BR:
pbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBOR_12625
Messenger RNA biogenesis [BR:
pbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBOR_12625
Ribosome biogenesis [BR:
pbd03009
]
Prokaryotic type
rRNA helicases
PBOR_12625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
UvrD-helicase
AAA_22
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIQ57679
UniProt:
A0A089MMA0
LinkDB
All DBs
Position
2942652..2944103
Genome browser
AA seq
483 aa
AA seq
DB search
MSEAQVQFSDYGLNEEIIRALEVLKYVDPTEVQRKVIPVALNAQDLIVKSQTGSGKTAAF
AIPLCELVDWNENKPQALVLTPTRELAQQVREDITNIGRFKRIKAVALFGKQPFAPQKIE
LTQKTHVVVGTPGRVFDHIDRGTLNLSRIKYLVIDEADEMLSMGFIEQIEKIIKQLPKER
VTMLFSATLPEVIKNLCRKYMTEPVDIEIEASGITTASIEHALIEVRQAAKFGLLSDLLT
VENPDSCIIFCRTQEQVNALFRGMADLEYPVDKIHGGMEQDERFEVMNAFKRGQFRYLIA
TDVAARGIDIENITHVINYDIPLEKESYVHRTGRTARAGKSGKAITFVTPNEHKWVKEIE
GYIGFTLPEMKAPSDDAVAYAKPAFDLKLGKKQVRKAGKTEVMNQDIMKLYFNGGKKKKL
RAVDFVGTIAKLEGITAADIGIITIQDNVTYVDILNGKGSLVLQAMKETTVKGKLLKCHI
AKK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagcacaagtacagtttagtgattatggtttaaatgaagagattatccgcgca
ctggaggttctgaagtacgtggatcctaccgaggtgcagcggaaggtcattccggtagcg
ctgaacgcgcaggatctgatcgtgaagtcgcagaccggcagcggcaaaaccgcagcgttc
gccattccgctctgtgagctggtcgactggaatgagaacaaaccccaggcgctggtgctg
accccaacccgggagctggcccagcaggtgcgtgaggatattacgaatatcgggcgcttc
aagcggattaaggcggtagcgctgttcggcaagcagccttttgccccgcagaagattgag
cttacccagaagacgcatgtggtcgttggcacgccgggccgtgtgtttgaccatatcgac
cgcggaacgctgaacctcagccggattaaatatctggtgattgatgaagcggacgaaatg
ctcagcatgggcttcattgagcagattgagaagattatcaagcagctgcccaaggaacgt
gtaacgatgctattctcggcgacgctgccggaagtgattaagaatctgtgccgtaagtac
atgacggagccggtggatatcgagatcgaagccagcggaattacgacggcgtcgattgag
catgcgctgattgaagtgagacaggctgccaagtttggactgctgagcgacctgctgacg
gtggagaatccggatagctgtattattttttgccgcacccaggagcaggtgaatgccctc
ttccgcggaatggcggatctggagtatccggtggacaaaatccacggcggcatggagcag
gacgagcgttttgaggtcatgaatgcattcaagcgcggccagttccgttacctgattgcc
accgacgttgccgccagagggattgatattgagaacatcacccatgtcatcaactacgat
atcccgctggaaaaagagagctacgtccaccgcaccggccggaccgcccgcgcaggcaaa
agcggtaaagcgatcaccttcgttacgccgaacgagcacaaatgggtcaaggaaatcgaa
ggctacatcggcttcactctgccggagatgaaagctccatcggatgatgccgtagcctat
gccaaaccggcgttcgatctgaagctgggcaagaagcaggtccgcaaagccggtaaaacc
gaggtcatgaaccaggacatcatgaagctatacttcaacggcggcaagaagaagaagctc
cgcgcggtcgatttcgtcggcaccatcgccaagcttgagggcatcacggctgcggacatc
gggatcatcacgattcaggataacgtgacctacgtcgatattctgaacggcaagggatcg
cttgtgctgcaggcgatgaaggagacgaccgtgaagggcaagctgctgaagtgccatatc
gcgaaaaaataa
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