Paenibacillus borealis: PBOR_13045
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Entry
PBOR_13045 CDS
T03324
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbd
Paenibacillus borealis
Pathway
pbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBOR_13045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbd03019
]
PBOR_13045
03009 Ribosome biogenesis [BR:
pbd03009
]
PBOR_13045
Enzymes [BR:
pbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBOR_13045
Messenger RNA biogenesis [BR:
pbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBOR_13045
Ribosome biogenesis [BR:
pbd03009
]
Prokaryotic type
rRNA helicases
PBOR_13045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AIQ57756
UniProt:
A0A089L8E7
LinkDB
All DBs
Position
3030195..3031853
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AA seq
552 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPLAMAGSDLIGQAQTGTGKTAAFGIPL
ISKIAREEEKIVALIMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEDGGELNEYKGIAIQLLEQYDSVQLLSAAM
KLLTGDNKDAQIELTPEDPIRAKRRGGKNDIRSGRKPNGGGYGGNRTGSGTGSSSGGGYR
GNRDNASSGGSTRGGYSSGYGSNSGSSYGGGYKGNRDAGAGRDGGASRSADRKPSPRPSS
TSARPAKQDYDV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcttggagccaaaagtgctacaggcaatcactgaacta
ggatttgaggaagcaacacccattcaggagcaagctattccgcttgcaatggccggatcg
gatctaatcggccaggcacagacgggtacaggtaagaccgctgctttcgggattcccctc
atttccaagatcgcccgggaagaagaaaaaatcgttgcactgattatgacgcctacacgc
gagcttgctatccaagtagcagaagaaattggcaaattgacccgcttcaagggacttcgt
tcactggctatctatggcgggcaggatatcggccgtcaaatccgcggacttaagaagaaa
cctcagatcattattggtactcctggacgtctcctggatcatatcaaccgcaaaaccatc
cgtcttgatgatgtacagaccattgtacttgatgaagctgatgaaatgctggatatggga
ttcatggaggatatccagacgatcctcaagctcgttccggaagaacgtcagacgatgctc
ttctcggctactatgcctcctaacattcaacgtcttgcccagcagttcctgaagaatcca
cagcatgtatccgtaattcctaagcaaatcagcgcaccgctaatcgatcaggcttatatt
gaagttcctgaacgccagaagttcgaagcactcagccgtttgattgatatggagtcccct
gatctggctatcgtcttcggccgtaccaaacgccgggtagacgagcttgctgaaggattg
cagaaacgcggatattccgctgatggcctgcatggtgacttgtcgcagaaccagcgcgat
gctgtaatgcgcaaattccgcgacggcagtattgatgtactggttgctacagacgttgca
gcccgcggtctggacgtttccggtgtaactcatgtaatcaacttcgaccttccgcaggat
ccggaaagctatgtacaccgtatcggccgtaccggccgtgccggtaaagaaggaacagca
tggtccttcgtaactcctcgcgaaatggatcacctgcacctgatcgaacgtgttacccgt
caccgcattacccgtaaaccgcttcctactatggctgaggctattgaaggcaaacaacgc
attacggcagaacgtctgctggcaatggttgaggacggcggcgaactgaacgaatacaaa
ggtattgccattcaattgctggagcaatatgattctgtacagctgctgtccgcagctatg
aagcttcttaccggcgataacaaggatgcgcaaatcgagctgactcctgaagatccgatc
cgcgcgaaacgccgcggaggcaagaacgatatccgcagcggacgcaagcctaacggcggc
ggctatggcggcaaccgtacaggctccggaactggcagcagcagtggcggcggctatcgc
ggtaaccgtgataatgccagcagcggcggaagcacccgtggcggctacagcagcggctat
ggcagcaacagcggcagcagctacggcggcggctacaaaggcaaccgtgatgcgggagca
ggacgcgatggcggtgcaagccgcagtgcggaccgcaaaccatcgccgcgcccaagcagc
acaagcgcccgtccggctaaacaggattacgacgtttaa
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