Paenibacillus borealis: PBOR_21055
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Entry
PBOR_21055 CDS
T03324
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbd
Paenibacillus borealis
Pathway
pbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBOR_21055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbd03019
]
PBOR_21055
Enzymes [BR:
pbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBOR_21055
Messenger RNA biogenesis [BR:
pbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBOR_21055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ59144
UniProt:
A0A089MRN0
LinkDB
All DBs
Position
complement(4835570..4837189)
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AA seq
539 aa
AA seq
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MTFNDLNLIPPILKALSLENYTSPTPIQEESIPAALAGRDILGCAQTGTGKTAAFSLPII
QLLSQQPSRTGGAKRIRSLILTPTRELALQISENIQAYSKFTTIRSTAIVGGVSQKAQER
ALSQGADILIATPGRLIDLISQRHVDLQHVQILVLDEADRMLDMGFIHDVKRIIAKMPAK
KQTLFFSATMPTEISQLVKTLLVDPVKIEITPVSSTVDRIEQSIYLLENGNKQNQLNRLL
QDPSIVSALVFTRTKRGADRVTRDLTRINITAQAIHGNKSQNDRQNALRNFKSGATRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGIAISLCEAEEIPYLKDI
QKLIGKVIPEVKDHAYPMSKSNLALLADRPGKAPAKPSQKAKTNPARKPKSEWFTQGKQG
GGYGNAGSGAKSASGNSYAGSGAKSASGNSYAGNGAKSASGSSYAGNGAGSSRPAGESGN
RAGSGSRPGERSAARPGGNQSNKPAGGQYGRSSQSGNRPGGSQSGRSGSRPAANAGRSQ
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgatttgaacttgattcccccgattctcaaggcactcagcctggaaaac
tatacatccccgactccaatccaggaagaatccatccctgcggcgttggccggcagagat
attctgggttgtgcccagacaggtaccgggaaaaccgcagctttttcattaccgattatt
cagctgctcagccagcagccgtccagaaccggcggagcgaaacgtattcgttcactgatt
ctgacaccgaccagagagcttgctctgcaaatctccgagaatattcaggcatacagcaag
ttcacaacgatccgctcgacagcgattgtcggaggggtatcccagaaggcccaggaacgg
gcgcttagccaaggtgcagatattctgattgctaccccgggcagactgatcgatctgatc
agccagagacatgtggatctgcagcatgtgcagattcttgtactggatgaagcggaccgc
atgctggacatgggcttcattcacgatgtgaagcggattatagccaagatgccggccaag
aagcagacgctgttcttctcggcaacgatgccgacggagatttctcagctggtgaagact
ttgctggtggacccggtgaaaattgagattactccggtatcttccaccgtggacagaatt
gagcaatcgatttatttgctggagaacggcaataagcagaatcagctgaaccgtctgctg
caggatccttcgatcgtgtcggcgctcgtcttcacccgcaccaaacgcggggctgaccgg
gtaacccgggatttgacccggatcaatattaccgcccaggccattcacggcaacaaatcg
cagaatgaccgccagaatgcgctgagaaacttcaagagcggtgcaacacgggtgctggta
gctacagatatcgccgcccgcgggattgatattgatgagctgtcccatgtcatcaacttc
aacctgccgaatattccggaaacttatgttcaccggattggccggaccggacgtgcggga
atgagcggaatcgccatctcgctgtgcgaagctgaggaaattccgtacctgaaggatatc
cagaagctgatcggcaaggtgattccggaagtgaaggatcatgcttatccgatgtccaag
agcaatctggcattgctggcagaccgtcctggcaaagcaccggccaaaccgtcgcagaaa
gccaaaacgaacccggcacgcaagccgaaatcggaatggttcacgcaaggcaagcagggt
ggcggttatggcaatgcaggcagcggggcgaaaagcgcatcgggtaacagctatgcaggc
agcggagcgaaaagtgcgtcgggtaatagctacgcgggtaacggagcgaaaagcgcatcg
ggcagtagttatgcaggcaacggagctggcagcagccgtcctgctggcgaatcgggcaac
agagcaggctccggcagccgtcccggtgaaagatctgccgcccgtccaggcggcaaccaa
agtaataaaccggctggaggccaatacggccgttcaagccagtccggtaacagacccggc
ggaagccaaagcggacgctctggcagccgtcctgccgctaatgcaggccggtcgcaataa
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