Paenibacillus borealis: PBOR_21230
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Entry
PBOR_21230 CDS
T03324
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbd
Paenibacillus borealis
Pathway
pbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBOR_21230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbd03019
]
PBOR_21230
03016 Transfer RNA biogenesis [BR:
pbd03016
]
PBOR_21230
Enzymes [BR:
pbd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PBOR_21230
Messenger RNA biogenesis [BR:
pbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PBOR_21230
Transfer RNA biogenesis [BR:
pbd03016
]
Prokaryotic type
tRNA degradation factors
PBOR_21230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AIQ59177
UniProt:
A0A089LE79
LinkDB
All DBs
Position
complement(4874237..4876339)
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AA seq
700 aa
AA seq
DB search
MEQRVEMQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CAPDIAAMIGTSAALSISDVPFNGPIGGVAVGRINGEFIINPDVAQQAISDIYVVVAGTK
DAIMMVEAEANEVTEDVMLEAIMFGHDEVRKIVAVIEQLVAVAGKEKMAVKLHAVNTDVN
TEVRAFAESRLVEAVRIAEKHARQDAIDHINTETVEYFAEKYIETPELLKDVKEVLHDIV
KDEVRRLITHDKVRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGD
VQILDGIDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF
PYTIRLVSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDI
QGMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRKILQDALQQAKEGRMFILGKMNEAI
SAPRTSLSKYAPKIIIININPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIGSSN
EEMIQKARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAK
VEDVVAIGDTITVKVTEIDQQGRVNLSRKAVLTSETGAKA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacgtgttgaaatgcagctgggcggaagacgccttgtgctggaaacaggccgt
ctggccaaacaagcgaacgcagccgttatggtgcgttacggagatacttcagtattgtgt
acggttacagcatcaagtgagcctaaagatctggatttcttcccgcttacggtgaactat
gaagaaagattatatgcagtaggtaaaatcccgggcggattcatcaaacgtgaaggacgt
ccaagtgaaaaagcgatcctgtcgagccgtctgaccgaccgtccgatccgtcctttgttc
cctgagggattccgcaatgacgtgcaggtactcaacctcgtcatgagcgtggatcaggac
tgtgcgcctgatattgcagctatgattggtacttccgctgcactgagtatttccgatgtg
cctttcaacggtccaatcgggggcgttgctgtaggccgtattaacggtgagttcatcatc
aaccctgatgtggcgcagcaggcaatcagcgatatctatgtcgttgtagccggtactaag
gacgctatcatgatggtagaagctgaagccaatgaagtgactgaggatgtaatgcttgaa
gcgattatgttcggccatgacgaagtccgcaagatcgtagctgtaattgagcagctcgtg
gctgttgccggaaaagaaaaaatggcagtgaagctgcacgcggttaacactgatgtgaat
acagaggttcgcgcttttgctgagagccgtctggttgaagctgtaagaatcgccgagaag
catgcccgtcaggatgcaatcgatcacattaacactgaaacggtggagtatttcgcagag
aaatacatagaaacaccagaacttcttaaagatgttaaggaagtgctgcatgatatcgtg
aaggacgaagtaagacgtctgatcacgcatgataaggtacgtcccgatggccgtaagctg
gatgagatccgtccgattgaatgcgatacagccctgctgccgcgtacacacggttccggt
ctgttcacacgcggacaaactcagattcttagcgtatgtacgttaggcgcactgggggat
gtacagattcttgacggtatcgatcccgctgaaaccaaacgcttcatgcatcactacaac
tttcctccgttcagcgtaggggaagcccgtccgctgagagcaccgggacgccgcgagatc
ggccacggggcactgggtgaacgcgcattgtccaaggttattccaagtgaaactgaattc
ccgtacacgatccgtctggtatcggaagctattgaatccaatggttccacttcccaggcc
agcatctgtgccagtatcctggcgatgatggatgcaggggtgccaatcaaggcgcctgta
gccggtgttgctatgggtctgatcaaagacggagagcatgtctccatcctgacagatatt
caaggcatggaagatcacctcggcgatatggactttaaggtagcaggtacagcagagggc
gtaacggcgatccagatggatatcaaaatcgacggtatcgaccgcaaaattcttcaggat
gcgcttcagcaggccaaagaaggacgtatgttcatcttgggtaaaatgaatgaagcgatc
tccgcgccaagaacaagcctgtccaaatatgctccgaagattattatcatcaacatcaat
ccggacaaaatccgtgatgttatcggtgctggcggtaagatcatcaacaaaatcattgaa
gaaaccggcgtaaagatcgacatcgaacaggatggccgtgtattcatcggctcctccaac
gaagagatgatccagaaggcccgcggcattatcgaaggcattgtgcgtgaagtacaggtc
ggcgaaatttatgtgggtaccgttagacgcatcgagaagttcggcgcatttgttgagcta
attccgggtaaagacggtctcgtgcatatttcccagctgtccacagaacgtgtggctaaa
gtggaagatgttgttgccattggggataccattaccgttaaggtaaccgaaatcgatcag
cagggccgcgtcaatctgtcgcgcaaagctgttctgacctcggaaaccggagcgaaggcg
taa
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