Paenibacillus borealis: PBOR_27540
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Entry
PBOR_27540 CDS
T03324
Name
(GenBank) ATP-dependent helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pbd
Paenibacillus borealis
Brite
KEGG Orthology (KO) [BR:
pbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbd03400
]
PBOR_27540
Enzymes [BR:
pbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBOR_27540
DNA repair and recombination proteins [BR:
pbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PBOR_27540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
AAA_16
AAA_30
ResIII
AAA_22
DUF5302
Motif
Other DBs
NCBI-ProteinID:
AIQ60282
UniProt:
A0A089LHC8
LinkDB
All DBs
Position
complement(6224062..6228216)
Genome browser
AA seq
1384 aa
AA seq
DB search
MSIHPVTEAKPEGSLWSDDQWRAIAESGSDILVAAAAGSGKTAVLVERIIRKISNEEAGF
SVDRLLVATFTKAAASEMRQRIREALERKLEEDTSGENEYLRRQLALLGRASITTLHSFC
LEVIRRYYQLIPIDPGFRILNEHEAEMMRQELLDELMEEKYGEVTEDGEDSVFVRLVDWF
SGERSDDAVHSLIQRLHDFARSHPWPAQWLRDTAADFSLPDAESLSHTPWVQSILAEARL
TLDGAISQLLQAREIALQPGGPAPYADNLTADLDMAQGLRDAVEAQPWADLYDIFMEISF
GKLKPCKKDATDPGLQESVKATRDQVKKSLLELQKSLFGRPAESFLGELHEAAPLMSELA
ETVIGFGERYRLEKAGRGLVDFSDLEHYCLQILRHPDSLPGHSLPSDAAMEYRSQFDEVL
LDEYQDTNSVQEEIVRLISREFPGNRFMVGDMKQSIYRFRLAEPGLFLDKYRRFSADPSA
EGNGSGLLAGEADARTEASPGQNDNGGGSVIDLARNFRSRLEVVNAVNMVFRQIMDSNVA
EISYDERAELVYGANFPGAVEKGPDTYFAPELLLIDKGTSASGQPEEPGEDDELPQQENE
AVESETAQLEARAIARRISQMTGMTGGEPLLIYDKALRIMRPVVYGDIVILLRSARVWTP
LMIEELRNEGIPAYGDQNKGYFQATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREE
ELAKVRLCSTGTFYDALVAASGGRAAAGATPAGHDGAAGGDPAAEIAAAYDLFAREEEIV
PEGMAAKAENSAARTEIDPQLQEKLRIFLNLLESWRNTARQGSLSDLIWRIYRESGYLEW
VGGLPGGFQRQNNLKALYDRAVQFENETSARGLFRFLVFISRLRENGGDLGVAGGSSEEA
GGVRIMTIHKSKGLEFPVVFLAGMAKMFNRQDLHSPFLMHKELGFGPRFVERETRVSYPT
LPYLAINRRSRLELLAEEMRVLYVGLTRPRDKMILVGTVRDLPRTVSGWTAMQGREELLL
ADHLLARGRSYLDWVGPALIRHPAAAILRKLAGSEGTVSTALHGDDSNWSISVLGASELG
SGSFLAADGDSDKNEERRMALEALRRGETVPSLATASAGQIADRLLWTYPYAAASGIPAK
TSVTELKALLSMQDQPSLDLLEETYVPGGQKTRSGGAGYGDSLHLQRPKFMEKRGLTPAE
RGTAYHTVMQHIPLDEPVDRSVLEATLARLERLAILSKEQADAVELGEVEDFCTSELGRR
LFKSSWKTREQPFSYSVPADEAYRGLAYLDEAAAGLPADSARGSFNETVLIQGVIDCLFR
EEGRLILLDYKTDFVPVQEGGLETLTEKYRFQLELYSKALLDILGEPVSEVWLYFFDGGH
AVRL
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatacatccagtaacggaagcgaagccggaagggagcctgtggagtgatgaccag
tggcgcgccattgccgagagcggcagcgatattctcgtcgcggcggcagcgggttccggc
aaaacagctgtactcgtagagcgcattatccgcaaaataagcaatgaagaagcaggcttc
agcgtggaccggctgctggtagcgacattcaccaaggctgcagcctccgagatgcggcag
cggatccgggaggcactggagcgcaagctggaagaggatacaagcggtgagaacgaatac
ctgcgccgccagcttgccctgctgggcagagcatctattacgacgctgcattccttctgt
cttgaagtcatccgccgttactatcagctgattccgattgatccgggcttccgtatactc
aatgagcatgaagctgagatgatgcgccaggagctgctcgatgagctgatggaggagaaa
tacggtgaggtcactgaagacggggaagatagcgtattcgtccggctcgtggactggttc
agcggggagcgcagtgacgatgcggtgcattcgctgattcagcggctgcatgatttcgca
cgcagccatccctggccggcacagtggctgcgggatacggctgctgatttctcactgccg
gatgcagagtccttgagccataccccttgggtacagagcattctcgccgaagccaggctg
acgctggatggtgccatcagccagctgctgcaggcccgtgaaatcgcgcttcagcccggc
ggaccggcgccttatgcggataacctgacggctgacctggatatggcgcagggattacgg
gatgccgtagaagcgcagccctgggctgatctgtatgatattttcatggaaatctctttt
ggcaagctgaagccctgcaagaaggatgcaaccgatcccggcctgcaggagagtgttaag
gcaacccgggatcaagtgaagaagagcctgctggagctgcagaaatccttgtttgggcgt
ccggcggaatctttcctgggtgaactccatgaagcggcaccgctgatgagcgagctggcc
gagacggttatcgggttcggtgaacgttaccggctggagaaggcgggccgcgggctggtg
gatttcagtgatctggagcattactgcctgcagatcctgcgccacccggactcgcttccg
gggcattccctgccgtcggatgctgccatggaataccgcagccagttcgatgaggtgctg
ctggatgaatatcaggataccaacagtgtacaggaggagatcgtccggctgatctcccgt
gagttccccggcaaccgcttcatggtcggggatatgaagcagagtatttaccgcttccgc
ctggctgaaccggggttgttcctggacaaataccgcaggttcagcgctgatccatctgct
gaaggtaacggcagcggcctgcttgccggtgaagcggatgcccggactgaagccagtccc
gggcagaacgataatggcggcggctcggtcattgacctggcccgcaatttccgcagccgg
ctggaggttgtgaatgccgtaaatatggttttccggcagatcatggacagcaatgttgca
gagataagctacgacgagcgcgcagagctggtctatggagccaacttcccgggagcggtg
gagaaagggccggatacttattttgcgccggagctgctgctgatcgataaggggacttct
gcatccggacagccggaggaacccggggaggacgatgagctgccccagcaggagaatgag
gcagtagagagtgagactgcacagctggaagcacgggccattgcccggcgcatctcgcag
atgacaggaatgaccggcggggaaccgctgctgatctatgataaggcactgcggatcatg
cgtccggtagtgtacggtgatatcgttattctgctgcgctccgcgcgtgtgtggacgccg
ctgatgattgaagagctgcggaatgaaggcattccggcatatggcgaccagaacaaaggc
tacttccaggctaccgaggtggagatcgccttatcgctgcttcagattgtagataatccc
cgccaggatattccgctggccggtgttctgcgttcaccggtggtgaacctgcgcgaggag
gagctggcgaaggtgcgcctatgcagcaccggaacgttctatgacgcgctggttgcggca
tcaggcggccgggcggcagcgggggcaaccccggctgggcatgacggagccgcaggcgga
gacccggcggctgaaattgcagcggcttatgatctttttgcccgggaagaggagatcgtg
ccggaaggcatggctgccaaagcagaaaactcagcagcgcgcacggagattgatccacag
ctgcaggagaaactgcggattttcctgaatctgctggagagctggagaaacaccgcccgg
caggggagcttaagcgatctgatctggcgtatttaccgggaaagcgggtatctggaatgg
gtcggcgggcttcccggcggctttcagcgccagaacaatttgaaggctttgtatgaccgg
gccgttcagttcgagaatgagacttcagccagaggcttgttccgcttcctcgtgttcatc
tcacggctgagagagaacggcggcgatctgggcgttgccggaggcagcagcgaggaggct
ggaggcgtccggattatgacgatccacaagtccaagggcctggagttcccggttgtattc
ctggcaggcatggccaaaatgttcaatcggcaggatctgcattccccgttcctgatgcac
aaggaactcggcttcggtccccgcttcgtggagagggagacgcgggtcagctaccctaca
ctgccttacctagccatcaaccgccgttcacggctggagctgctggctgaggagatgcgc
gtgctctacgtcggactgacccgtccgcgcgacaaaatgatcctggtaggcacggtccgc
gatttgccgcgcacggtatccggctggactgctatgcagggccgggaggagctgctcctg
gcagaccatctgctggcccggggccgcagctatctggactgggtgggaccggcgctgatc
cgccatcccgcagccgctattctgcgcaagcttgcaggtagtgaaggcacggtatccacg
gcgcttcacggcgatgattccaactggagcatatcggtgctcggcgcttcggagctgggc
tccggatcttttctggcagcagacggtgacagtgacaagaacgaagaacgccgtatggcg
cttgaggcgctccgccgtggtgagactgtgccttcgctggcaactgcttctgcagggcaa
atagcagacaggctgctgtggacctatccgtatgcggctgcttccggcattcccgccaaa
acatcggtgaccgagctgaaggcattgctgtccatgcaggaccagccttcccttgatctg
ctggaagaaacctatgttcccggggggcagaagacaagaagcggcggtgcgggatatggt
gacagcctgcatctgcagcgcccgaaatttatggaaaagcgggggcttacccctgctgag
cgcggaaccgcctatcataccgttatgcagcatattccgctggatgagccggtggaccgg
tctgttctcgaggctacacttgctcggcttgaacggctagccatacttagcaaggaacag
gcagacgcggttgaactaggggaagtagaggatttctgtactagtgaactgggccgcaga
ctctttaagtcttcctggaagaccagagagcagcctttcagctatagcgttcctgcagac
gaggcttaccggggacttgcatatctggatgaagcggcagcgggactcccggctgacagt
gccagagggagtttcaatgagaccgtcctgattcaaggggtgattgactgtctgttccgg
gaggaaggccggcttattctgctcgattacaaaacggatttcgtccctgtgcaagagggc
gggctcgaaacgctgactgagaaataccgcttccagctggagctgtacagcaaggcgctg
cttgatattctgggcgagccggtcagcgaggtctggctgtacttttttgacggcggacat
gctgtgaggttgtga
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