Plasmodium berghei: 55151019
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Entry
55151019 CDS
T01111
Name
(RefSeq) ATP-dependent RNA helicase DDX42, putative
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pbe
Plasmodium berghei
Pathway
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
55151019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbe03041
]
55151019
Enzymes [BR:
pbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
55151019
Spliceosome [BR:
pbe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
55151019
Complex B
55151019
Complex C
U2 SnRNP specific factors
55151019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Nicastrin
Motif
Other DBs
NCBI-GeneID:
55151019
NCBI-ProteinID:
XP_034422847
UniProt:
A0A509AU67
LinkDB
All DBs
Position
12:complement(<647262..>649597)
Genome browser
AA seq
719 aa
AA seq
DB search
MMHNDKDEDNFFEDDNYENNKNEKIHDDNGQDEVDPLDEFMLEINKVIEEEKNKKKREQN
KFNNKEIGSEFENSIDSYAKSPRKCEKSKNINDTDQKHPIDKKNSNNSNDAKNDNSLDDN
DVTADIYEFLEKKNEELMNEKNKEKEHGKSFNNTKNYFVSAGTKDPQMEIKDDNSDFHDF
LNDGNYKNKNDEIIICNINYDEIELDEFKKDIFVTDENINNFTLEQSVEYKKKNNIKTIG
FNVPKPIFSFLQLKNIIDKEVLENMYDLSISILSPAQSIVIPTFLSGRDFIANSRTGSGK
TLAYIISLIIHLMNYKKESKKDAQKGAKKKNSDPHALILTPTREICVQISEEINKISMNK
LSSTLLFNGINFKNAYDDIHKGVDIIISNVKTLINFVNKKYLSLTNIKYVILDEFDKLFS
NQFINSVISILNNIRTDSIRAFFSSTFSDSIHELIKPYLSKKHILIQVDDNNMIIDKKFY
IVEESYKYKYLLHAIHQFSNNGQGFIFCNSKKNVLALYERLKTEIQLKHIKFDFIYGDMD
QTDRLYKLDSLKNKRTQILISTGLMERGINVIDLNFVINYDCPRDLFVYIHRIGRCSRMD
NKGYAVTFITPSEKKMAYLIYTHLKNAKETIDEELENFILRSNLDNHIEIKKLKRKMNNP
NYDNPLKKVGPTNNNNTIISLGSMPFQASSSQKQNEKPPPKQVHMISSNDVLSSSSDEY
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgatgcataacgataaagatgaggataatttttttgaagatgataattatgaaaataat
aaaaatgaaaaaatacatgacgataatggacaggatgaagttgatccattagacgaattt
atgttagaaataaataaagtaatcgaagaagaaaaaaataaaaaaaaacgcgagcaaaat
aaatttaataataaagagataggaagtgagtttgaaaattctatagatagttatgcaaaa
tcgccaagaaaatgtgaaaagagtaaaaatataaatgatacagatcaaaagcacccaatt
gataaaaaaaatagcaataatagtaatgatgccaagaatgataacagtttggatgataat
gatgtgactgcagatatttatgaatttttggaaaaaaaaaatgaagaattaatgaatgaa
aaaaataaagagaaagagcatggaaaaagttttaataacactaaaaactattttgtaagc
gctggaacaaaagatccacaaatggaaataaaagatgataatagtgattttcatgatttt
ttaaatgatggtaattataaaaataaaaatgatgaaataataatttgtaatattaattat
gatgaaattgaattagatgaatttaaaaaagatatatttgttactgacgaaaatataaat
aattttactctcgaacaaagtgtggaatataaaaaaaaaaataatataaaaacaataggt
tttaatgtaccaaagccaattttctcttttttacaattaaaaaatattatagataaagaa
gttcttgaaaatatgtacgatttgtctataagcattttatctcctgctcaatccatagta
atcccaacatttttaagtggtagagattttatagcaaacagtagaactggatcagggaaa
acacttgcatatattatctcgctaatcattcatttgatgaattataaaaaagaaagcaaa
aaggacgcacaaaaaggtgcgaaaaaaaaaaactcagatcctcatgctcttatattgaca
ccaactagagaaatatgtgtgcaaatttctgaggaaataaataaaatatctatgaataaa
ttaagttcaactttattatttaatgggataaattttaaaaatgcttatgatgatatacac
aaaggggttgatatcataatatccaatgtaaaaacattaattaactttgttaacaaaaaa
tatttatcattgactaatatcaaatatgttatattagacgaatttgataaattattttca
aaccaatttattaattcagttatttcaatattaaataatatacgaactgattctataaga
gcctttttttcttcaacattttcagatagtattcatgaattaatcaaaccgtatttatct
aaaaaacatattttaatccaagtagatgataataatatgataatagataaaaaattttat
attgttgaagaatcatacaaatataaatatttattacatgcgatccatcagttttcaaac
aatggccaaggttttattttttgtaatagtaaaaaaaacgtgttagcactatatgaacga
cttaaaacagaaatacaactaaaacatataaaatttgattttatttatggtgatatggat
caaacagatagattatataaactagattctttaaaaaataaaagaacacaaatattaatt
agtactggtttaatggaaagaggcataaatgttattgatttaaattttgtaattaattat
gattgccctcgtgacctttttgtttatattcacagaattggtcgatgttccagaatggac
aataaaggctacgctgtcacgtttattaccccatcagaaaaaaaaatggcatatcttatt
tatactcatttaaaaaatgcaaaggaaacaatagatgaagaattagaaaattttatttta
agaagcaacttggataaccatatcgaaataaaaaaattgaaaagaaaaatgaataatcct
aattatgataacccattgaaaaaagtagggcccacaaataataataatacaattataagt
ttaggctcaatgccttttcaagcaagttcatcacaaaaacaaaatgaaaaacctccacca
aaacaggtgcatatgatttcttcaaatgatgttttatcatcttcaagtgatgaatactaa
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