Plasmodium berghei: PBANKA_0306800
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Entry
PBANKA_0306800 CDS
T01111
Name
(RefSeq) ATP-dependent RNA helicase UAP56, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pbe
Plasmodium berghei
Pathway
pbe03013
Nucleocytoplasmic transport
pbe03015
mRNA surveillance pathway
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_0306800
09122 Translation
03013 Nucleocytoplasmic transport
PBANKA_0306800
03015 mRNA surveillance pathway
PBANKA_0306800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_0306800
03041 Spliceosome [BR:
pbe03041
]
PBANKA_0306800
Enzymes [BR:
pbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBANKA_0306800
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PBANKA_0306800
Spliceosome [BR:
pbe03041
]
Complex C
Other components
EJC/TREX
PBANKA_0306800
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PBANKA_0306800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
55147991
NCBI-ProteinID:
XP_034419952
UniProt:
A0A509AEV0
LinkDB
All DBs
Position
3:complement(239595..241086)
Genome browser
AA seq
466 aa
AA seq
DB search
MAAIDHNVQDELVDYEDDDNMLDNKDVKCDIGGNLLNNNNKGVNESGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LETNDSKDIKEEKDMNNASGDMNQNSGSQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLK
NVRCEVVYGGISMNKHVVLFKGNNIPHIIIGTPGRILALIREKYMLTDKIQHFVLDECDK
CLERLDMRGDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLH
GLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSISIHGG
LNQEERIERYDKFKKFENRILVSTDLFGRGIDIERINIVINYDMPENSDSYLHRVGRAGR
FGTKGLAITFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaatagatcataatgttcaagatgagttagtagattacgaagatgatgataac
atgttagataataaggatgtcaaatgtgacatcggaggtaaccttttaaacaacaataat
aaaggagttaatgaaagtggtgctatgagaggtagttatgctactgttcatactggagga
tttaaagatttttttttaaaaccagaattattaagagcaattagcgaaagtggatttgaa
catccatctgaggtacagcaagaaactataccagcagcaataacaggtaccgatatttta
tgtcaggcaaagagtggtatgggaaaaactgctgttttcgttttatcaattttacaacaa
cttgaaactaatgatagcaaagatataaaagaagaaaaggatatgaacaatgctagtgga
gatatgaatcaaaatagcggttctcaaaataaatatgttagatgtttaggtatagcacat
actcgtgaattagcttatcaaataaaaaatgaatttgatagatttagcaaatatttaaaa
aatgttagatgtgaagttgtttatggtggtatatctatgaataagcatgtagtcttattc
aaaggaaataatatacctcatataattattggtacacctggtcgtatattagcattaatt
agagaaaaatatatgttaacagataaaattcaacattttgttttagatgaatgtgataaa
tgtttagaaaggttagatatgagaggcgatgtacagaaaatttttatttctactccttta
aaaaaacaagttatgtttttttcagcaactatggcaaaagaaatgagagacgtatgcaaa
aagtttttacaaaaccctgtagaaatatttattgatgatgaagctaagttaaaattacac
ggactattgcagcattatgttaaattacaagaaaaagataaaacaagaaaattaatagaa
atattagatgccttagaattcaatcaagttataatttttgttaaatccgttacaagagct
atcacactagacaaattattaaccgagtgcaactttccatccatatctatacatggtggt
ttaaatcaagaagaaagaattgaaagatatgataaatttaaaaagtttgaaaacagaata
ttagtatccactgatttatttggaaggggtattgatattgaaagaataaacatcgttatt
aattatgatatgccagaaaattcagattcttatttacacagagttggaagagctggaaga
tttggtacaaaaggtttagctattacttttgtatcttctcaagaagatacattagcctta
aatgaagtacaaaccagatttgaggtagctatttctgaaatgccaaataaaatagattgt
aacgaatatattaaccagtaa
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