KEGG   Plasmodium berghei: PBANKA_0406800
Entry
PBANKA_0406800    CDS       T01111                                 
Name
(RefSeq) pre-mRNA-processing factor 19, putative
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
pbe  Plasmodium berghei
Pathway
pbe03040  Spliceosome
pbe04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pbe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PBANKA_0406800
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PBANKA_0406800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pbe03041]
    PBANKA_0406800
   04121 Ubiquitin system [BR:pbe04121]
    PBANKA_0406800
   03400 DNA repair and recombination proteins [BR:pbe03400]
    PBANKA_0406800
Enzymes [BR:pbe01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     PBANKA_0406800
Spliceosome [BR:pbe03041]
 Complex B
  Other components
   Prp19 complex
    PBANKA_0406800
 Complex C
   Prp19-CDC5 complex
    PBANKA_0406800
Ubiquitin system [BR:pbe04121]
 Ubiquitin ligases (E3)
  U-box type E3
   PBANKA_0406800
DNA repair and recombination proteins [BR:pbe03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    PBANKA_0406800
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Prp19 WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st B-prop_COPA_B_2nd WD40_RFWD3 DUF7165 Beta-prop_WDR75_2nd Beta-prop_HPS5 Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_SCAP U-box zf-Nse TBCA Beta-prop_DCAF4 PROPPIN Fez1 DUF4200 Beta-prop_SPT8 Cytochrom_D1 DUF2850 CENP-H GED
Other DBs
NCBI-GeneID: 55148181
NCBI-ProteinID: XP_034420125
UniProt: A0A509AHM6
LinkDB
Position
4:249319..250818
AA seq 499 aa
MSILCTISGQTPDEPVVSKTGYIFEKRLIEKHIKNYGICPVSGEILTLEDLYPIKIEKFV
KPRPITATSIPGLLSIFQTEWDSMISEMFSLRTHVNDVRNQLSHCLYQYDAATRVIAKLL
KEKNNCQEEINNLRNQILQLKNGNDILDDLEIGISEDLLNEMQNIAKELLMNRKKRKVEN
VNSPNEWKKITSTNEFNIHSSIIPGVTCLSIDINKLKYNYDDDHKNHNFFSGGKDGNIYY
VSLNNNKIISKLQGHLKKVNSIISHPSNSICISGSNDKTIRIWKGDPDTNEYVTSHIITK
HKDKINSLSLHPLENYFISSSNDSIWILHDMETGKTIKTCKSSPSPFKNLSIHPDGMMLG
IGSEDSNIYIYDIKSQEYKASLTGHTKSIESISFSENGYYLASISKDNTLKLWDLRKATS
FQTIELENTPKHITFDYSGKYLSLSVGNDIQIFNFETKNQANLITTLSSHTDIVTQTCFG
SRTSYLLSSSMDKTVKLWS
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgtcaattttgtgtacaataagcgggcaaacgcccgatgaacctgtagtaagtaaaact
ggatatatttttgaaaaacgattgattgaaaaacatattaaaaattatgggatttgtcca
gtaagcggagaaatactaactttagaagatttatatccaattaaaattgaaaagtttgta
aaacctagacctattacagccacaagtataccaggactattatcaatttttcaaacagaa
tgggattcaatgatatctgaaatgttcagtctaagaactcatgttaatgatgttcgaaat
caattaagccattgcttatatcaatatgatgcagctactagagtaattgcaaaattatta
aaagaaaaaaataattgtcaagaagaaataaataatttacgaaaccaaattttacaatta
aaaaatggaaatgatatattagatgatttagaaattggaataagtgaagacttattaaat
gaaatgcaaaatattgcaaaagaattattaatgaatagaaaaaaaagaaaagtagaaaat
gttaactcaccaaatgaatggaaaaaaattacaagtactaatgagtttaatattcattca
tctataataccaggtgtaacttgtttatctatagatataaataaattaaaatataattat
gatgatgatcataaaaatcataattttttttcgggaggaaaagatggtaatatttattat
gtctcattaaataataataaaattatatcaaaattacaaggtcatttaaaaaaggttaat
tcaattatttcacatccatcaaactctatatgcatttctggatcaaatgataaaactatt
cgaatatggaaaggtgatcccgatacaaatgaatatgtaacatcacatattatcacaaaa
cataaagataaaattaattctttatcattacatccccttgaaaattattttataagttca
tcaaacgatagcatatggattcttcatgatatggaaacagggaaaactattaaaacatgc
aaaagtagtccaagtccttttaaaaatttatcaatacatcctgatggaatgatgcttggt
ataggatcagaagattcgaatatttatatatacgatattaaaagtcaagaatataaagca
tcattaacaggtcatactaaatcgatagaatcaatttcatttagtgaaaatggatattat
ttagcatctatttctaaagataatacactaaaattgtgggatttaagaaaagctacaagt
ttccaaactatcgaattagagaacactccaaaacacatcacttttgattattcgggaaaa
tatctatccctttcagtaggaaatgatatacaaatttttaatttcgaaacaaaaaatcaa
gcaaatttaatcaccacgctttcatcacatacagacatagttacacaaacctgttttggt
agtagaacatcatatttattatcaagttctatggataaaactgttaagttgtggagttga

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