Plasmodium berghei: PBANKA_0514100
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Entry
PBANKA_0514100 CDS
T01111
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pbe
Plasmodium berghei
Pathway
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_0514100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbe03041
]
PBANKA_0514100
Enzymes [BR:
pbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PBANKA_0514100
Spliceosome [BR:
pbe03041
]
Complex C
Other components
Step II factors
PBANKA_0514100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
AAA_22
DEAD
S1
AAA_19
nSTAND3
PhoH
GIPC1_GH2
T2SSE
nSTAND_NTPase5
Sigma54_activ_2
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
55148445
NCBI-ProteinID:
XP_034420382
UniProt:
A0A509AGC5
LinkDB
All DBs
Position
5:complement(534064..538127)
Genome browser
AA seq
1162 aa
AA seq
DB search
MDGLKKINLIQKINEKLYDHLGIEDDNLTEFIIFLCEKSTCLEEFCKEVFENGGEIEQSV
LKNIYNLIKKSKSEINDDENVNKQAAENGNDDDYNHISKEIQEIEKKNEKMKKFGCLSIK
NSTNLAPLTDQSNEEGKPKDEDKGKDNSLNKKERIDENVKLKKNRQLKYSLDDVKNIKKA
KYEGDNEDDYRALKVNNIFSGKIKKITDFGMFISFKTRDGYKEGLVHITDIDQNNKRINL
NEKFKRNMIVKVKIKGIFGEKISLNMSEVDQKTGQNLVSNNKEKNIDENKTYFFDNIDDE
FKHKRNKNRIDKYSEYFNDPKEAIKYESVIKMKSDYSKWEIQQLIKSGIIYDENIKNEYK
NLKYEEKIDDEEEMIEIEVNEKEPSFLKGQTTKAGANLSPIQIIVNAEGTLAKAITTTSA
LTKERKEQKKNEQNALFDSIPKDISRPWEDPNPNLGERTIAEALKNVGKNYDLPDWKKNY
INNNISIGIKNSLPLTEQRKKLPIYNLKLDLMKAIKKNNVLIVIGETGSGKTTQIPQYLH
EAKYTDHGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSNDTIIKYLTD
GMLLREALSDTMLSRYSFIILDEAHERTISTDILFCLLKDVVKKRSDFKLIVTSATLDAE
KFSAYFFNSPIFTIPGKIFPVEILHSKEPESDYVEACLITVLNIHLNEHPGDILVFLTGQ
EEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSIIFEPAPPGCRKCILATNIA
EASLTIDGIFFVIDPGFCKIKKYDSKRDMDSLIIAPISKANAKQRAGRAGRTGPGKCYRL
YTEEAYKNEMAETSVPEIQRINLGSIVLLLKALGVNDFLHFDFMDSPSIETLIYSLENLY
YLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCTDDICTIVSMISVQNIFYRPQ
NKILLADKKKNKFIMPQGDLITYLNIYNKWKENSFSNYWCHENFIQSRALKRAQDVRKQL
LSIFEKYNYQVKKRGYDISNSTNYVNICKSICSGYFNHVCKRDSQQGYTTLLTNQQVFIH
PSSTLFSKNPLFVVYHELVLTNKEYIRDCTIIQPQWLIQLAPNLFIPADEKKISKIKLRE
KIEPLHNYYEEPNAWRLSRRKG
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggatgggttaaaaaaaataaacttaattcaaaaaataaatgaaaaattatatgaccat
ttaggaatagaagatgataatttaacagaattcataatttttttgtgtgaaaagtctaca
tgtttagaagaattttgtaaagaagtgtttgaaaatggcggagagatcgaacaatcagtg
cttaaaaatatttacaatttaataaaaaaatcgaaaagcgaaataaatgatgatgaaaat
gttaataagcaggctgcagagaatggaaacgacgacgattataatcatatttcaaaagaa
attcaagaaattgaaaaaaaaaatgaaaaaatgaaaaagtttggatgcttatcaattaaa
aacagcactaatttggctccccttactgatcaaagtaacgaagaaggaaaacccaaagat
gaagataaaggaaaggacaactcgcttaataaaaaagaaagaattgatgaaaatgttaaa
ttgaaaaaaaataggcaattgaaatattccttagatgatgtaaaaaatataaagaaagca
aaatacgaaggtgataatgaagatgattatagggcattaaaagttaataatatatttagc
ggaaaaattaaaaaaattacagattttgggatgttcatttcctttaaaacgagagatgga
tataaagaaggactagtacatataacagatattgaccaaaataataaaagaattaattta
aatgaaaaatttaaaagaaatatgattgttaaagttaaaataaaaggtatatttggtgaa
aaaattagtctaaatatgtctgaggttgatcaaaaaactggacaaaatttagttagtaat
aataaggaaaaaaacattgatgaaaataaaacatatttttttgataatattgatgatgaa
tttaagcataaaagaaataaaaatcgtattgataaatattctgaatattttaacgaccca
aaagaagcgataaaatatgaaagtgttataaaaatgaaaagtgactattcgaaatgggaa
atacaacaattaataaaaagtggaataatttatgatgaaaatataaaaaatgaatataag
aatttaaaatatgaagaaaaaatagatgatgaagaagaaatgattgaaatagaagttaat
gaaaaagaaccaagttttttaaaaggtcaaacgacaaaagcaggtgcaaatttatcgcct
atacaaattattgtaaatgctgaaggaacgttagctaaagctataacaacaacatcagca
ttaactaaagaaagaaaagaacaaaaaaaaaatgaacaaaatgcactttttgattctata
cctaaagatattagcagaccttgggaagatcctaatccaaacttaggagaaagaacaata
gcagaagcattaaaaaatgttggaaaaaattatgatttaccagattggaaaaaaaattat
ataaataataatatatcaattggtataaaaaattcattacctttaactgaacaaagaaaa
aagttacctatttataatctaaaactagatttaatgaaagctataaaaaaaaacaatgtt
cttatagttattggtgaaacaggaagtgggaaaacaacacaaatacctcaatatttacat
gaggctaaatatacagatcatggaattgtagggtgcacacaaccaagaagagttgctgca
atgtcaattgcaaaaagagttagtgaagaatttggttgcatattagggcaagaagttgga
tattctatacgttttgatgattgcacttctaacgacacaataattaaatatttaacagac
ggtatgcttttaagagaggccctaagtgacactatgctatccagatattcttttataata
cttgatgaagctcatgaaagaacaatctcaacggatattctgttttgtctcctaaaggat
gttgttaagaagagatctgatttcaaactgatcgtcacgtctgctactttggatgcagaa
aaattctcggcttattttttcaattctccaattttcacaattccaggaaaaatatttccg
gtggagattctgcattcaaaggagcctgaaagcgattatgtagaagcatgtcttattaca
gttttaaatatacacttaaatgagcaccctggagatattttagtatttttgacaggacaa
gaagaaattaatacagcttgtgaaatattacatgaacgtatgaaaaagttagaaagtatg
tctccgccacctttaattatattacccatatattcatcacttccatcagaaatgcaaagt
atcatatttgaacctgccccaccaggatgtagaaaatgtatattagcaacaaatatagca
gaagctagtttaacaatagatggtatattttttgtaatagatcctgggttttgtaaaata
aaaaaatatgattctaaaagagatatggattcattaataatagcccctatatctaaagca
aatgctaaacaaagagcaggtagagcaggtagaactgggcctgggaaatgttatagactc
tatactgaagaggcttataaaaatgaaatggcagaaactagcgttccagaaatacaaaga
atcaatttaggaagtatagtattattattaaaagcattaggagttaacgattttttgcat
tttgatttcatggattcaccatctatcgaaactcttatatattctttagaaaacttatat
tatttaggcgcattagatgataatggatatttaactaaattaggaaaaaaaatgtcaaat
ttcccaatggagcctaacttatctaaaattttattaacatctattaattttaattgtact
gatgatatatgtactattgttagtatgatcagtgttcagaatattttttatagacctcaa
aataaaattttgttagctgataaaaaaaaaaataaatttataatgccacaaggagattta
ataacatatttaaatatatataataaatggaaagaaaacagtttttcaaattattggtgc
catgaaaattttattcaatcaagagcattaaaacgggctcaagatgttagaaaacaatta
ttatcgatttttgaaaaatataattatcaagttaaaaaaagaggatatgatattagcaat
tctacgaattatgttaatatatgtaaaagtatatgttcaggatattttaatcatgtatgt
aaaagagatagccaacaaggatatacaaccttattaacaaatcagcaagtttttatacat
ccatcttcaactctttttagcaaaaatccattatttgttgtatatcatgaacttgtttta
accaataaagaatacataagagattgtacgataattcaaccccaatggttaatacaatta
gcacctaacttatttatacccgctgatgaaaaaaaaatatcaaagattaaacttcgagaa
aagatcgaacctttacataattattatgaggaacctaatgcttggcgattatctcgaaga
aaaggatag
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