Plasmodium berghei: PBANKA_0523100
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Entry
PBANKA_0523100 CDS
T01111
Name
(RefSeq) eukaryotic initiation factor 4A-III, putative
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pbe
Plasmodium berghei
Pathway
pbe03013
Nucleocytoplasmic transport
pbe03015
mRNA surveillance pathway
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_0523100
09122 Translation
03013 Nucleocytoplasmic transport
PBANKA_0523100
03015 mRNA surveillance pathway
PBANKA_0523100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_0523100
03041 Spliceosome [BR:
pbe03041
]
PBANKA_0523100
03009 Ribosome biogenesis [BR:
pbe03009
]
PBANKA_0523100
03012 Translation factors [BR:
pbe03012
]
PBANKA_0523100
Enzymes [BR:
pbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBANKA_0523100
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PBANKA_0523100
mRNA cycle factors
Stress granule specific factors
PBANKA_0523100
Spliceosome [BR:
pbe03041
]
Complex C
Other components
EJC/TREX
PBANKA_0523100
Ribosome biogenesis [BR:
pbe03009
]
Eukaryotic type
90S particles
Helicases
PBANKA_0523100
Translation factors [BR:
pbe03012
]
Eukaryotic type
Initiation factors
eIF-4
PBANKA_0523100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
BATS
CMS1
NAT10_TcmA_helicase
AAA_7
PhoH
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
55148539
NCBI-ProteinID:
XP_034420472
UniProt:
A0A509AGN1
LinkDB
All DBs
Position
5:<863845..>865017
Genome browser
AA seq
390 aa
AA seq
DB search
MDKEETYKSSEKLEICTSFESIGIDEGLLRGIYAYGFDRPSAIQQRGIKPILNGRDVILQ
SQSGTGKTCVFAVGALNCVNRNLNETQIIILSPTRELAEQTQKVCLALADYIHVTVYCCI
GGKKLSDDIKALNNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQV
YDIYRFLSPNTQIVLSSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFISIEKE
QWKYETLADLYESLTITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIML
KFRQCKYRVLISTDIWGRGLDVHEVSLVVNYDLPNSRECYIHRIGRSGRFGRKGVAINFV
KNDDIKILRDIEQFYSTQIDEMPMNITELL
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagaaacttataaatcctctgaaaaactagaaatatgtacaagttttgaa
agtataggaatagatgaagggttgttaagaggaatatatgcctatggttttgacagacca
tcagcaatacaacaaagaggtattaagccaatattaaatgggcgagatgttatattacaa
agtcaaagcggaacaggaaaaacatgtgtttttgctgttggagctttaaattgtgttaat
agaaatttaaatgaaactcaaataattattttatcaccaactcgagaattagcagagcaa
acacaaaaagtatgtttagcattagcagattatatacatgtaactgtatattgttgtatt
gggggtaaaaaactgagtgatgatataaaagcattaaataatggtgttcatattattagt
ggaacacccggaagaatatatcatatgttaaatttaaggcatttaaaatgtaaatatata
aaacagctagttattgatgaagctgatgaaatgctaaataaaggatttaaagaacaagtt
tatgatatttatcgatttttatcacctaatactcaaatagttttatcttcagctacttta
ccacacgaagtgttagaaataacaaataaatttatgcacaatcctgttaaaatattagta
aaaagagatgaattaactttagaaggtataaaacaattttttatatcaatagaaaaagaa
caatggaaatatgaaacgttagctgatttatatgaaagcttaactattacccaagcagta
gttttttgtaatactaaattaaaagtagattggctagctaaaaaaatgcaagaatctaat
ttcactgtgtgcaaaatgcatgcaggaatgagtcaaagcgaaagagatgatattatgtta
aaatttagacaatgtaaatatagagttttaatatcaactgacatatggggaagaggatta
gatgtacatgaagtttcgttagttgttaattatgatttaccaaattccagagaatgttat
attcatagaattggaagaagtggtagatttggaagaaaaggtgttgcaattaattttgta
aaaaatgatgatattaaaattttgagggatatagaacagttttattctacacaaattgat
gaaatgccaatgaatattactgagttattataa
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