Plasmodium berghei: PBANKA_0617500
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Entry
PBANKA_0617500 CDS
T01111
Name
(RefSeq) exosome complex component CSL4, putative
KO
K07573
exosome complex component CSL4
Organism
pbe
Plasmodium berghei
Pathway
pbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBANKA_0617500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_0617500
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PBANKA_0617500
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PBANKA_0617500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
55148748
NCBI-ProteinID:
XP_034420675
UniProt:
A0A509AJ93
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All DBs
Position
6:742372..743115
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AA seq
194 aa
AA seq
DB search
MDNIVLPGEVVGNINNYISGNNTYILNNEIRSTILGKKNISINNENKQIINIDVIKDYTP
LPQVGDLVICKVYRVTFNMIYCNIMLTNNKPLKNSLKGYINKSDIHIYEGDLGDNFDCFK
QGDIIKAKVLSIGQHSSYKLSTVGSDLGVIIALSEKGDILQPAAWNLMVNLSDMSFEQRK
VSNEFSFPCNDYMS
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggataatattgtgttacctggagaagtagttggaaacataaataattatataagtgga
aataatacatatatattgaataatgaaataagatcaacaatattaggtaaaaaaaatatt
agtattaataatgaaaataaacaaattattaacattgacgttataaaagattatacccct
ttaccccaagtaggagatcttgttatatgcaaagtatacagagtaacatttaatatgata
tattgtaacattatgttaacaaataataagccattaaaaaatagtcttaaaggatatata
aataaaagcgatatacatatatatgaaggagatttaggagataattttgattgttttaaa
caaggagacataattaaagcaaaggtattatccataggccaacattcatcatataaactt
tctactgttggatcagacttaggcgttattatagcattaagcgaaaagggcgatatttta
caacccgcggcatggaatttgatggtcaatttaagtgacatgagtttcgaacaaagaaag
gtctccaacgagttttcttttccatgcaatgattacatgtcttaa
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