Plasmodium berghei: PBANKA_0810600
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Entry
PBANKA_0810600 CDS
T01111
Name
(RefSeq) exoribonuclease, putative
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pbe
Plasmodium berghei
Pathway
pbe03008
Ribosome biogenesis in eukaryotes
pbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PBANKA_0810600
09123 Folding, sorting and degradation
03018 RNA degradation
PBANKA_0810600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbe03021
]
PBANKA_0810600
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_0810600
03009 Ribosome biogenesis [BR:
pbe03009
]
PBANKA_0810600
03016 Transfer RNA biogenesis [BR:
pbe03016
]
PBANKA_0810600
Transcription machinery [BR:
pbe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PBANKA_0810600
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
PBANKA_0810600
Ribosome biogenesis [BR:
pbe03009
]
Eukaryotic type
Pre-60S particles
RNases
PBANKA_0810600
Transfer RNA biogenesis [BR:
pbe03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
PBANKA_0810600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
55149176
NCBI-ProteinID:
XP_034421077
UniProt:
A0A509ANH7
LinkDB
All DBs
Position
8:<476825..>480706
Genome browser
AA seq
1293 aa
AA seq
DB search
MGVPTFYKWLVTRYPKIAKAVYETRDNDVYIRRARINENGEFYKVCDLGAYVNNTDENHC
SDNVNGYFDNMYLDMNGIIHLCSHGDGSKKVKTDEEIFLNIFLYIERLFDIIEPQKLLYM
AIDGVAPKAKMNQQRSRRFKSILASEIEKRAYIELRNKFLSENRNVPDDYHHWDSNIITP
GTQFMHELSVALKYFIEHKITNDEKWKKIVVIFSDANVCGEGEHKIYNFIKSQRAQKGYD
PNTRHVIHGMDADLIMLSLASHEPYFYILREIINLDPKEENKPQVKDNYVGVFKGKGDLQ
YCTKFLRNNNSTTIDGNSNKGKKKYCNKYNDRNYANINISSTCSINYENWNELQILDLTI
LREYLYKDFFFDAKYNLERCIDDFIFICFLCGNDFLPHLPSISIASGSIDQLLLLYQKVF
PVLGDYLINEGSMNFQSFIKYISFIAEVERETFVSQYDFKKKREKRELQKDAFKRPKCQD
DGKKNDPMSQARNDRTSQHEQISPKNNTDNGIINNYNDNNTSNPNGLPSYDLNTNPTMSK
KAMYENKIQSMQPIRNFKFKEKKGEKSINFLVRSTPSTTIETGVSGNMPISENNKILHED
KDEGNIHDSSIINQEIFNTNFNNDQIDNTRNIDNNSDDGENKESHIRKPLNINPDGAIFE
EESPEMKKLNDITEFNLLLKEAVKKANECENPKEDVELGADDDPNDLRARYYKSKFHLDE
NDNVDEFVQEVVYKYIEGLAWVLCYYFQECPMWHWYYPYYYAPLSSDLLIKDINISFEKD
EPLLPFEQLLCVLPSNSSHCLPKMYRELMLKSESPIIDFYPKTFKEEENGKKFKYQWIVL
LPFVEKERIIRFARNLDDTLTDEEKKRNRRGLNKIYMSSTHTLSKKITTSMRTYIKEIKD
KEKTVEEIGTENRGTNEQKKDEDGTTTDESKDKKNIYELFFKNMNLKIPIDNNESINLFG
YLNCKHEDSDVNILKKIFRFSSNFSTTCNSAFFIQPEYKKHKSAILQNHIIPKRVLTVLD
INNEERKLRFNAPAAKRMILNSLSTNHPEIYSYPKYRNMKNSNLYPDHHNQNRYPNDHMP
GNNQNYGNCNAKDYNYIHNTRTYDPYSNSPKNQGYHYTQNHPNYNNNYPPLSNNKNAPLY
GTSTHSYDNKNGSNYNMHNGNRSIQNTHNYHNNGRNNHNNYGGKRNSYNIDPAYHDGSYN
NSYNPNYNNNYGKNRNDKPPPSNLYNSGGKYHGDYKNNNYNSGGNNYNNYNHYNNDATHH
ARNSFRYSDENSRTEPKKPHYYNRSMPYKDKER
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgggggtacctaccttctacaaatggctagtaactaggtatccaaaaatcgcgaaagcg
gtatatgaaactcgggataatgatgtatatataagaagagccagaataaatgaaaatgga
gagttttataaggtgtgtgatttgggggcatatgttaataatacagatgaaaatcattgt
tcagataatgtaaatggttattttgataatatgtatttagatatgaatggtataatccat
ttatgttcacatggtgatggtagtaaaaaagtaaagacagatgaagaaatatttcttaat
atatttttatatatagaaagattatttgatataattgagccccaaaaacttttatatatg
gctattgatggtgttgctccaaaagctaaaatgaatcaacaacgaagtagaagatttaaa
tctatattagcatcagagattgaaaaaagagcatatatagaacttcgaaataaattttta
tcagaaaatagaaatgttcctgacgactatcatcattgggatagtaatattataacacca
ggtacccaatttatgcatgaattatctgttgctttaaaatattttattgaacacaaaatt
acaaatgatgaaaaatggaaaaaaatagttgttatattttctgacgcaaatgtatgtggt
gaaggagaacataaaatttataattttataaaatctcaaagagcacaaaaaggatatgac
cctaatactcggcatgtaatacatggaatggatgctgatttaattatgctttcattagct
agccatgaaccctatttttatattttaagagaaataattaacttagacccaaaagaagaa
aataagcctcaggttaaagataactatgttggggtatttaaaggaaagggggatttacaa
tattgcactaagtttctaagaaacaataatagtactactatcgatggaaatagtaataaa
ggaaagaaaaaatattgtaacaaatataacgatcgaaattatgccaatataaatattagc
tctacttgctcaattaattatgaaaattggaatgaattacaaattttagatttaactatc
ttgagagaatatttatataaagattttttttttgatgcaaaatataacttagaaagatgt
attgatgattttatatttatttgttttttatgtggaaatgatttcttacctcatttacct
tcgatatctatagcatcaggaagtatagatcaattattattattatatcagaaagttttc
ccagttttaggggattatcttattaatgaaggctcgatgaattttcagtcctttattaaa
tatatatcatttattgctgaagtagaaagggaaacatttgtttcacaatatgattttaaa
aaaaaaagagaaaaaagagaattacaaaaggatgcattcaaacgaccgaaatgtcaagat
gatggaaaaaaaaatgatccaatgtctcaagcacgaaatgatagaacatcacaacatgaa
caaatttccccaaaaaataatacagataatggtataattaataattataatgacaataat
acttcgaatccaaatggattgccatcttatgatctaaatacaaatccaacaatgtcgaaa
aaagccatgtatgaaaacaaaattcaaagtatgcaacctatacgaaactttaaattcaaa
gaaaaaaaaggagaaaaaagtatcaattttcttgttcgatctacaccttcaacaactata
gaaaccggtgtaagcggtaatatgccaatttcagagaacaacaaaatattacatgaagac
aaagatgaaggtaatattcatgatagttctatcataaatcaagaaattttcaataccaat
tttaataatgatcaaattgataatacacgtaacattgataacaattcagatgatggtgaa
aataaggaatcccatattcgaaaacccttaaatataaacccggatggtgcaatattcgaa
gaagaatcacccgaaatgaaaaaattaaatgatataactgaattcaatttattattaaaa
gaagcagttaaaaaagcaaatgaatgtgaaaatcccaaagaggatgtcgaattaggagca
gatgatgatccgaatgatttaagggccagatattataaatctaaatttcatttagatgaa
aatgataatgttgatgaatttgttcaagaagttgtttataaatatattgagggtttagca
tgggtattatgctattatttccaagaatgccctatgtggcattggtattacccttattat
tatgctcctttatcttccgatttacttattaaagatataaacatatcctttgaaaaagat
gagccactattaccttttgaacaattattgtgcgttttgccatcaaattctagtcattgt
ttacctaaaatgtatagagaacttatgctaaaaagtgaatcaccaattattgatttctat
cctaaaacatttaaagaagaagaaaatggcaaaaaatttaaataccaatggattgtttta
ttgccatttgttgaaaaggaaagaatcattcgatttgcaagaaatttagatgatacatta
acagatgaagaaaagaaaagaaatcgaaggggattaaataaaatatatatgagttcaaca
catacactttcaaaaaaaattactacttcaatgagaacatacataaaagaaataaaagac
aaggaaaaaactgtggaagaaataggaaccgaaaataggggaaccaatgaacaaaaaaag
gatgaagatggaacaaccacagacgaatcaaaggataaaaaaaatatatatgaattattt
tttaaaaatatgaatctaaaaataccaatagataataatgaaagtattaatttatttggc
tatctaaattgcaaacatgaagatagtgatgtaaatattcttaaaaaaatatttcgattt
tcatccaacttttcaaccacatgtaacagtgcattttttattcaaccggaatacaaaaaa
cataaatctgcaatattacaaaatcatattataccaaaaagagtattgacagtattggat
ataaataacgaagaaagaaaactcagatttaatgcgcctgctgctaaaagaatgatctta
aatagtttaagtacaaaccatccagaaatatattcgtatccaaaatacagaaatatgaaa
aattcaaatttatacccagatcaccataaccaaaatagatatccaaatgatcacatgcca
ggtaataatcaaaattatggaaattgtaatgctaaggattataattatattcataacact
cgtacttatgatccttattcaaattcgccaaaaaatcaaggatatcactacactcaaaat
catccaaattacaataataattaccctccattgtcgaacaataaaaatgcacccttatat
ggcactagcacacattcatacgataataaaaatggcagcaattacaatatgcacaatgga
aaccgtagtattcaaaatactcacaattatcacaataatggcagaaataatcacaataat
tatggggggaaaagaaattcatacaatatagatccagcatatcatgatggatcatacaat
aattcttataatccaaattataacaataattacggaaaaaatagaaatgataaacctcct
ccaagcaatttatacaattcgggtggtaaataccatggtgattataaaaataacaattat
aactctggaggaaataattacaataattataaccactataataatgatgcaactcatcat
gcaaggaattcctttagatatagcgatgaaaattcccgtacagaacctaaaaaaccacat
tattataacagatctatgccatataaagacaaggaacgttag
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