Plasmodium berghei: PBANKA_1140200
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Entry
PBANKA_1140200 CDS
T01111
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pbe
Plasmodium berghei
Pathway
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_1140200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbe03041
]
PBANKA_1140200
Enzymes [BR:
pbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PBANKA_1140200
Spliceosome [BR:
pbe03041
]
Complex C
Other components
Step II factors
PBANKA_1140200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
Flavi_DEAD
ATPase
PhoH
T2SSE
AAA_30
ABC_tran
Motif
Other DBs
NCBI-GeneID:
55150768
NCBI-ProteinID:
XP_034422608
UniProt:
A0A509ALF5
LinkDB
All DBs
Position
11:complement(1523050..1526502)
Genome browser
AA seq
1150 aa
AA seq
DB search
MIASNNFYGDSSSEEEKIVETKIKEPSNDNLIFKKRNIKNISKKGNNDNSVKNIFKDIEF
EINQKNIFIKKRNFQNINNERKDTPKKLSNKNNGQNVSKKYDNKGIENSDKSDFSNYSFE
YNKNNNQSDSNYNLKHKNTNESSNDSDISKNSNIRNDYEDNNRLNMKKTIYTKKNKDIRK
KVEKEYYMNNNDRILDEIWYTKEDDFIDSFYNVDVENTYYKEKKMQNNSKSILNSQREKI
NQKNVDNNLWELSKLKQGGVNSTYNKLQLERINEANNTNEVKKIVLIRQVTPFFIDKMKN
SNTRNNTDMHKNDPNIKEIDNFNSYIFDMKNNSTSYFNVVKDETCDFVKSAKKGSEFLKY
FKNESEKSKGRDRYWEIERSKLGELLKIYRNKSSKETDSNTNQYNMNMKLDKVDVEDEEN
RHKEDVFDYKKDKMYSINFDIRNNKKNTLKDKEDLLKLKESLPIYKSKKELLDAVYNNNI
IIIVGETGSGKTTQIVQYLYDEGYHKNGIICCTQPRRVAAVSVAYRVSYEMNVEIGSLVG
YTIRFEDNTSKQTKIRYVTDGILLRETLNDQDLDKYSVIIMDEAHERSINTDVLLGILKN
ICLKRNDLKLIVTSATIDSKKFSEFFGNAPIYNIQGRTFKVHLEYLRTPCNDYIECAVQK
AIEIHFSDNSYDQNFGDILIFMTGQDDINATCYLLSERFYEVYESYKESNSNKKETISKI
KNIINNKKDNNINDEKNTSIDNGKLNLEMSETNKDQVTRDQIDISSHISPFYIFPIYSQL
SSEQQSKIFQKYDLRKIIVSTNIAETSLTLDGIKYVIDTGYCKLKVYNQKIGMDVLQITP
ISQANANQRSGRAGRTGAGICYRLYTENTFLCDLYPNNIPEIQRSNLSNVVLLLKSLNVE
NIFEFDFIDAPSKESIISSLHELWVLGAINNEGNLTETGKKMILFPLDPPLSKIIIYSEK
FACTKEILIIVSMLSSPSIFIETKENTETVESKKEKFAVPESDHLTLLNIYLQWRVHDYS
YTWCNKNFIQYKSLNKAKEVYSQLSDIIKSLRIKNISCNNKWDLVRKTICSGYFHNAAKL
KSFSEYINLTTNVACHVHPNSSLYNIGYTPDYVIYQEIVFTTKEYMRNVTTVDPEWLCEL
GPLFFYMKNA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgattgcaagcaataatttctatggcgattcttcgtccgaagaagaaaaaattgttgag
acgaaaataaaagagcctagcaatgataacttaatttttaaaaagaggaacattaaaaat
ataagtaaaaagggtaataatgataatagtgtaaaaaatatatttaaagatattgagttt
gaaatcaaccaaaagaacatatttataaaaaaaagaaacttccagaatataaacaatgaa
agaaaagatactcctaaaaaattaagtaataaaaataatggtcaaaatgtgagtaaaaaa
tatgacaataaaggaatagaaaattcggataaaagtgattttagcaattactcgtttgaa
tataacaaaaataataatcaaagtgattccaattataatttaaaacataaaaatacaaac
gaatctagcaatgatagtgatatttcgaaaaatagcaacataagaaatgattatgaagat
aataatagattaaatatgaaaaaaacaatatatacaaaaaaaaataaggatataagaaaa
aaagtagaaaaagaatactatatgaataataatgatagaattttagatgaaatatggtat
actaaagaagacgattttattgattcgttttacaacgttgatgtagaaaatacatattat
aaagagaaaaaaatgcaaaataattctaaaagtatattaaatagtcaaagggaaaaaata
aatcaaaaaaatgtcgataataatttatgggaattaagcaaattaaaacaagggggtgtt
aattcaacatataacaagttgcagctagagcgaatcaatgaagctaataatactaacgaa
gttaaaaaaattgttttaattaggcaagtaacgccattttttattgacaaaatgaaaaat
tcaaacacgaggaataataccgatatgcacaaaaatgatccaaacataaaagaaatagat
aattttaatagttatatatttgatatgaaaaataactccacgtcttactttaatgttgtt
aaagacgaaacatgtgattttgtaaaatcagcaaaaaaaggtagcgaatttttaaaatat
tttaaaaatgaaagtgagaaatcgaaaggacgagatagatattgggaaatcgaaagaagc
aaattaggagaactattaaaaatttatagaaataaaagtagcaaagaaacagattcaaat
acaaatcaatataatatgaacatgaaactagataaagtcgatgtagaagacgaagaaaat
agacacaaagaagatgtttttgactataaaaaagataaaatgtatagtattaattttgac
ataagaaataataaaaaaaatacattaaaggataaagaagatttattaaaattgaaagaa
tcattacctatttataaatcaaaaaaagaattattagatgcagtatataataacaatatt
ataataattgttggagaaacaggttcaggaaaaacaacacaaatcgttcaatatctatat
gacgaaggatatcataaaaatggaattatttgttgtacacaaccaagaagagttgcagca
gtttcagttgcttatcgtgtgtcatatgaaatgaatgtagaaataggatctttagttggg
tatacaattcgatttgaagataatacaagtaaacaaacaaaaataagatatgttacagat
ggtatattattaagagaaaccttaaatgatcaagatttagataaatatagtgttattatt
atggatgaggcacatgaaagatctattaacacagatgttttgttaggtatattaaaaaat
atatgtttaaaaagaaatgatttaaaattaatagttacatctgcaactatagattctaaa
aaattttcagaattttttggaaatgcaccaatttacaatattcaaggaagaacattcaaa
gtacatttagaatatttaagaactccatgtaatgattatattgaatgtgctgttcaaaaa
gcaattgagatacatttttctgataatagttatgatcaaaattttggagatattttaatt
tttatgacgggccaagatgacattaatgctacatgttatctattaagtgagcgattttat
gaagtatatgaatcatacaaagaatcgaatagtaataagaaagaaacgataagtaaaata
aaaaatataattaataataaaaaggataacaatattaatgatgaaaaaaacacaagtatt
gacaatggaaaattaaatttggaaatgtctgaaacaaataaagatcaagttacacgtgat
caaattgatatatctagtcatatatctccattttatattttcccaatatattcacaatta
tctagtgaacagcaaagtaaaatatttcaaaagtatgatctcagaaaaataatagtttca
actaatatagctgaaacatctctaacattagatggaataaaatatgtaattgatacagga
tattgtaaacttaaagtatataatcaaaaaattggaatggatgttttacaaataacccct
atttcgcaagcaaatgctaatcaacgatcaggaagagcaggaagaaccggagctggaata
tgttatcgtttatatacagaaaatacatttttatgtgatctatatccaaataatattcca
gaaatacaaagaagtaatctatcaaatgtagtattgttattaaaatcattaaatgttgaa
aatatatttgaatttgatttcattgatgcaccaagtaaagaaagtattataagttcttta
catgaattatgggtattaggtgctataaataatgaagggaatttaaccgaaacggggaaa
aaaatgatactttttcctttagaccctcctttatcaaaaattattatatacagtgaaaaa
tttgcatgtactaaagaaatattaattatagttagtatgctttcttcaccgtctattttt
atagaaacaaaagaaaatacagaaacagttgagtcaaaaaaagaaaaatttgcagtacca
gaaagtgatcatttaacattattaaatatttatttacaatggcgggttcatgattattct
tatacttggtgcaataaaaattttattcaatataaatcgttaaataaagcaaaagaagta
tattctcaattaagtgatattattaaatctttacgtattaaaaatatatcatgtaataat
aaatgggacttagtaagaaaaactatttgttctggatattttcataatgctgctaaatta
aaatcattttcagaatatataaatttaacaactaatgtagcttgccatgtccatcccaat
tcttctttatataatattggatatacacctgactatgtcatataccaggaaattgttttt
accacaaaggagtacatgcgaaatgtcactacagtggatcctgagtggctttgtgaatta
ggtcccctctttttttacatgaaaaacgcgtga
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