Plasmodium berghei: PBANKA_1203700
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Entry
PBANKA_1203700 CDS
T01111
Name
(RefSeq) regulator of nonsense transcripts 1, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pbe
Plasmodium berghei
Pathway
pbe03013
Nucleocytoplasmic transport
pbe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PBANKA_1203700
03015 mRNA surveillance pathway
PBANKA_1203700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_1203700
Enzymes [BR:
pbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PBANKA_1203700
5.6.2.5 RNA 5'-3' helicase
PBANKA_1203700
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PBANKA_1203700
mRNA cycle factors
Common to processing body (P body) and stress granule
PBANKA_1203700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
NPHP3_N
PhoH
PIF1
nSTAND3
SRP54
AAA_22
AAA_16
AAA
Motif
Other DBs
NCBI-GeneID:
55150887
NCBI-ProteinID:
XP_034422715
UniProt:
A0A509AQ05
LinkDB
All DBs
Position
12:complement(<168885..>172712)
Genome browser
AA seq
1275 aa
AA seq
DB search
MNKTRNCSQIDVDNLCDLYNIGDRKNNKNKNNEIWNFNDLFEYENEMKHNNNDRRSTYEK
IKSTEYINKKNSKKNNNSSNYLCELSEKKRSNFDIDENRTHRLVSFSETCSDVESYPMSW
NESHIRGYSESSVEYMNKENDKEGINLKNEKHYFDSENEEIKNKCEDILSDEYIRDNKIK
KKLNKKKGKRRDENYYSQKNVKEYGEKNNKSVTSIYEGSNDDSENDQLKYYRCRYCEIDY
IDSVVQCNTCERWFCNGSYGTCGSHIVTHLVRSKHKEIKLHKNSILGETILECYNCGCRN
VFLLGFLPTLEEGVVIIICRDPCLGYYISINNKNGKNGKNDKNDKKMMKKEISSQDEESE
GESKIKECNLEKWQPVIEDRCFLEWLVNIPRKEDAEKKGKLTTSVNVNKLEEFWKNKKDV
YINELDLKILDDEPKKVKLKYTDAIDYKLTFSPLIELESNYDKSIKEGHKQTNVRIRWDV
GLNKKRYAHFVYIKEESELRIVIGDELKISYVYPNGDIWSCEGHISRLNTNEEIALELKV
LYNIDGPWNYNINTGFVVEFVWKSTAYDRMQLALNEFAFNSFSLSGYLYHKLLGHDIIDE
PIDYNKKELSLNNDNKRYNYNKKTNDNLSTYKIVNYSAPNLAPLNHSQIDAIQKSLNSPL
SLIQGPPGTGKTLTCATLVYHMHKTKMGGKVLVTAPSNVAVDQLSVRIHRTGLKVVRLCA
RSRESVSSIADYLYLHNQVKLLKTNIGEELNKLLELKEEVGELSQKDENRLKKLILHAEY
KILIEADVICTTCVGAMDKRLKKFRFNQVLVDEATQSTEPECLVPLVTGAKQIVLVGDHC
QLGPIIVCKKAASSGLGKSLFERLMMLGITPFRLEVQYRMHPCLSEFPSYVFYDGCLQNG
ITLKEREYPLKNFPWPNSKYPMFFYNSNGLEEMSASGTSYLNRNEAQNMEILVRALLNSG
LKATQIGVITPYEGQRAYITSLFQKNISYQHCLDIEVASVDAFQGREKDFILLSCVRSNK
KLGIGFLNDPRRLNVALTRAKYGLIICGNAKVLSRHHFISKEKINSNETITNVNSVWINL
LNQFKKKNLIVEGCLSNLKPITINIPTPVKQPSKYINFDYFHDLKNISSKLYDKEINRYT
RGDGNSKGNYKFRYQRNNSLLSQNMSNSSICNESVIDQDIYNFINERKRKNKYSLNSYIS
NLSQLSQSNGSIYDDILNLNGINSSESIEDGDFNHISWNFNENKIDNKISSKNEDIFPYL
FYQNNDINRQNKNIH
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaacacggaattgtagccaaatagatgtagacaatttatgtgatctgtataat
ataggggatagaaaaaataataagaataaaaataatgaaatatggaattttaatgatttg
tttgaatatgagaatgagatgaaacataataataatgatagaagatctacttatgaaaaa
ataaaaagcacagaatatataaataaaaaaaattcaaagaaaaataataattcaagtaat
tatttgtgtgaattatctgagaaaaaaaggtcaaattttgatatagatgaaaatagaacc
cacagattggtatcattttcagaaacatgctcagatgtagaatcatatcccatgtcatgg
aatgaatcacatataagaggttatagcgaatcgagtgtagagtatatgaataaagaaaat
gataaagaaggaataaatttaaagaatgaaaaacattattttgattctgaaaatgaagaa
ataaaaaataaatgtgaggatattttgagtgatgaatatattcgagataataaaataaaa
aaaaaattaaataaaaaaaaaggaaaaagaagagatgaaaattattattcccaaaaaaat
gtaaaagaatatggagaaaaaaataataaaagtgtaacaagcatttatgaaggtagtaat
gatgattctgaaaatgaccaattaaaatattatagatgtagatattgtgaaatagattat
attgatagtgttgttcaatgtaatacatgtgaaagatggttttgtaatggatcctatgga
acatgtggaagtcatattgttacacatctagttcgatcaaaacataaagaaataaagtta
cataaaaatagtatccttggagaaactatattagaatgttataactgtggatgccgaaat
gtttttttattaggatttttaccaacattagaagaaggggtagttattattatatgtcga
gatccgtgtttaggatattatatttctataaataataaaaatggtaaaaatggtaaaaat
gataaaaatgataaaaagatgatgaaaaaagaaatatctagtcaagatgaagagagtgaa
ggggaatcaaaaataaaagaatgcaatttagaaaaatggcaaccagttatagaagataga
tgttttttagaatggcttgtaaatattccaagaaaagaagatgcagaaaaaaaaggtaaa
ttaacaacatcagtaaatgtaaataagttagaagaattttggaaaaataaaaaagatgta
tatataaatgagttagatttaaaaatattagatgatgaacccaaaaaagtaaaattaaaa
tatacagatgcaatagattacaaattaacattttctccattaattgaattagaatcaaat
tatgataaatcaataaaagaagggcataaacaaactaatgttagaataagatgggatgtc
ggattaaataaaaaaagatatgcacattttgtatatatcaaagaagaaagcgaattaaga
atagtaataggagatgaattaaaaatatcatatgtatatccaaatggtgatatatggagt
tgtgaagggcatatatctagattaaatactaatgaagaaatcgcattagaattaaaagta
ttatataatattgatggaccatggaattataatataaacacaggatttgttgttgaattt
gtttggaaaagtactgcttatgatcgtatgcaattagctttaaatgaatttgcttttaat
tcattttcattaagtggctatttatatcacaaattattaggtcatgatataattgatgaa
cctatagattataataaaaaagaacttagtttaaataatgataataagagatataattat
aacaaaaaaacaaatgataatttatctacttataaaattgtaaattattctgctcctaat
ttagctccattaaatcattcgcaaatagatgcaattcaaaaaagtttgaattccccactt
tcattaattcagggtccacctggaactggcaaaacattaacatgtgcaacattagtatat
catatgcacaaaacgaaaatggggggaaaggttttagttactgctccaagtaatgtagct
gttgatcaattatctgttcggattcatagaaccggattaaaagttgtaaggttatgtgca
agaagtagagaatctgtatctagtatagccgattatttatatttacataatcaagtaaaa
ttacttaaaacaaatataggagaagaattaaataaattattagaattaaaagaagaagta
ggtgaattatctcaaaaagatgaaaatagattaaaaaaattaattttacatgcagaatat
aaaattttaattgaagcagatgtaatatgtactacatgtgtaggtgcaatggataaacga
ttaaaaaaattccgttttaatcaagttttagttgatgaagcaactcaatcaactgaacct
gaatgtttagttccattagttacaggagctaaacaaatagtattagttggagatcattgt
caattaggacctataattgtatgtaaaaaagcagcaagttctggattagggaaaagttta
tttgaacggctcatgatgttaggtattacgccgtttagattagaagtgcaatatagaatg
catccatgtttaagtgaatttccatcttatgtattttatgatggatgtttacaaaatgga
attacattaaaagaaagagagtatcctttaaaaaattttccatggcccaattctaaatac
cctatgtttttttacaattctaatgggcttgaagaaatgtctgcatctggaacgagttac
ttaaatagaaatgaagcacaaaatatggaaatattagtgagagctttattaaattctgga
ttaaaagctacacaaattggtgttataactccatatgaaggacaaagagcatatattact
tcactttttcaaaaaaatatttcttatcaacattgtttagatatcgaagttgcatctgta
gatgcattccaaggacgagaaaaagattttattcttttatcatgtgtacgatcgaataaa
aagttaggaattggatttttaaacgatccgagaagattaaatgttgcattaacaagagca
aaatatggattaataatttgtggtaatgcaaaagttttatctagacatcattttatttct
aaagaaaaaataaattccaatgaaactattacaaatgtaaattcagtttggattaatttg
ttaaatcaatttaaaaaaaaaaatttaattgtagaaggttgtttatccaacttaaaacca
atcacaattaatattccaactccagttaaacaaccatcgaaatatataaattttgattat
tttcacgatttgaaaaatataagtagcaaactatatgataaggaaataaatagatataca
agaggtgatggaaatagtaaaggcaactataagtttagatatcaaagaaataattctctt
ttaagtcaaaatatgtcaaatagtagtatatgtaatgagtcagttattgatcaagatatt
tataattttattaatgaaagaaaaagaaaaaataaatattcccttaattcttatattagt
aatcttagtcagctttctcaatccaatggtagcatatatgatgatattctcaacttaaat
gggatcaatagttctgaaagtattgaggatggtgattttaatcacataagttggaatttt
aatgaaaacaagattgataacaaaattagttcgaaaaatgaagacatatttccatattta
ttttatcaaaataacgatatcaatcggcaaaataagaatattcattag
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integrated database retrieval system
