Plasmodium berghei: PBANKA_1307200
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Entry
PBANKA_1307200 CDS
T01111
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5, putative
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pbe
Plasmodium berghei
Pathway
pbe03018
RNA degradation
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_1307200
09123 Folding, sorting and degradation
03018 RNA degradation
PBANKA_1307200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_1307200
03041 Spliceosome [BR:
pbe03041
]
PBANKA_1307200
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PBANKA_1307200
mRNA degradation factors
5'-3' decay
Lsm complex
PBANKA_1307200
Spliceosome [BR:
pbe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PBANKA_1307200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
55151413
NCBI-ProteinID:
XP_034423225
LinkDB
All DBs
Position
13:<352955..>353579
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AA seq
101 aa
AA seq
DB search
MATISGSETFLPLALMDKCIGSKIWIMMKGDKEIIGKLVGFDEYVNMVLEDVTEYTYINN
VKKVNKIKKLLLNGLNITIMVPGGTPVNYYDYEEKLEESIV
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaataagtgggtcagagacatttttgccacttgctttgatggataaatgtatt
ggtagtaaaatatggataatgatgaaaggtgacaaagaaataattgggaagctagttggc
ttcgatgaatatgtcaacatggtgttagaagatgttactgaatacacatatataaataat
gttaaaaaggtaaacaagattaaaaaattattattaaatgggttgaatataacaattatg
gttcctggaggcacccctgttaattattatgattatgaagagaaattagaagaaagcatt
gtttaa
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