KEGG   Plasmodium berghei: PBANKA_1356900
Entry
PBANKA_1356900    CDS       T01111                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4, putative
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pbe  Plasmodium berghei
Pathway
pbe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pbe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PBANKA_1356900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pbe03041]
    PBANKA_1356900
Spliceosome [BR:pbe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PBANKA_1356900
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd PRP4 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st NBCH_WD40 RMC1_N WD_LRWD1 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 55151925
NCBI-ProteinID: XP_034423726
UniProt: A0A509AQV2
LinkDB
Position
13:2168520..2170367
AA seq 615 aa
MKISDVINDYKSLESNKLKNSDIISKQISNDRILEEFEIKNKIRKVCLGIPTKDLEVKNI
LRLLKEPICLFAEDNYDKRNRLKHILVTRYDKLIIKNKGENIEVEEFKNILKKYYIDFSK
LYDTTSPEYQKVNELEDELRNKGIKKDDATTKSGISDNILKDKFYTESTEELKLSRINIT
LKTLPRIYLYKEMINNFQNKYSREQYENYISSYNEHIKSELDLYISQLGDSRPLTMGKFS
PDNSVFAVSSYNTYINIFNFKNDNYNLVKTLKNGHVDKINCVEWNYPNNYSYYSTTNYTD
INKSDLLLASCSSDKTFCIWKPFLYETNDGNNSSENYSNLSNKSDPNDNNDGKKGGVKKM
KKNEKKNNTQENANENDETGSEDINNNGNSKHPLLCKVKAHDDRINKICFHPLNKFVLTC
SEDETIKFFDIETQNELFYQEGHNSNVYSATFNPYGNLYLSGDSKGGLMLWDIRTGRNIE
RKHMIHNNCIMNISFNPFMPNMFCTCSSDNTIKIFDLRNFQVSCNILAHNKIVTDAIFEP
AYGRYIASSSFDTYIKIWDTVNFYCTKILCNNDNKVRNVDISPDGNLISCTSFDRTWKLY
KIEEFEKDNIMSDFF
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgaaaattagtgatgttataaatgactataaatcacttgaaagtaataaactgaaaaat
agtgatataattagcaaacaaattagcaatgatcgtatattggaagaattcgaaataaaa
aataagataaggaaagtatgtctaggtattccaacaaaggatttagaagtaaaaaatatt
ttaagattgttaaaagaacctatttgtttatttgcggaagataattatgataaaagaaac
agattaaaacatattttagtcaccagatatgataaattgataataaaaaacaaaggagaa
aatatagaagtcgaagaatttaaaaatattttaaaaaaatattatattgattttagtaaa
ctttatgatacaacttcaccagaatatcaaaaagtaaatgaacttgaagatgaattgcga
aataaaggaataaaaaaagatgatgctactacaaaaagcggtatatctgataatatatta
aaagataaattttacactgaaagtacagaagaattaaaattatctcgtataaatataaca
ttaaaaacgttacctagaatatatttatataaagaaatgataaataattttcaaaataaa
tattcacgagaacagtatgaaaattatattagttcatataatgaacatataaaatcagaa
ttagatttatatatttcacaattaggagatagcagaccattaactatgggaaaattttcg
ccagataatagtgtatttgcagtaagtagttacaatacatatataaatatatttaatttt
aaaaatgataattataatcttgttaaaacgcttaaaaatggtcatgttgataaaataaat
tgtgttgaatggaattatccaaataattattcatattacagtacaactaattatactgat
ataaataaaagtgacttgttattggcttcctgctcatctgataaaacattctgtatatgg
aagccatttttatacgaaacaaatgatggtaataattcttctgaaaattattctaatcta
tccaataaaagtgaccccaatgataacaacgatggaaagaaggggggggtaaaaaaaatg
aaaaaaaatgaaaaaaaaaataatacccaggaaaatgcgaacgaaaatgatgaaactggt
agcgaagacataaataacaatgggaatagcaagcaccctttactatgtaaagttaaggct
catgatgatagaataaataaaatatgttttcatcctttaaataagtttgtattaacatgt
tcagaagatgaaacaataaaattttttgatatcgaaacacaaaatgaattgttttatcaa
gaaggtcataattctaatgtatattcagctacatttaacccatacggaaatttatattta
tcaggcgattcaaaaggtggtttaatgctatgggatattagaacaggaagaaatatcgaa
agaaaacatatgattcataataattgtataatgaatataagttttaatccatttatgcca
aatatgttttgtacatgttcttctgataataccatcaaaatatttgatttaagaaatttc
caagtttcctgtaatatattagcacataataaaattgttactgatgcgatttttgaacca
gcatatggcagatatatagcatcaagttcatttgatacttatataaaaatatgggatact
gtaaacttttattgtacgaaaattttatgcaataatgacaataaagtcagaaatgtggat
atatctcctgatggcaatttgatttcttgcacatcttttgataggacatggaaattgtac
aaaatcgaagaattcgaaaaggataatattatgtcggattttttttaa

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