Plasmodium berghei: PBANKA_1450500
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Entry
PBANKA_1450500 CDS
T01111
Name
(RefSeq) pre-mRNA-splicing factor SYF1, putative
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pbe
Plasmodium berghei
Pathway
pbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PBANKA_1450500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_1450500
03041 Spliceosome [BR:
pbe03041
]
PBANKA_1450500
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PBANKA_1450500
Spliceosome [BR:
pbe03041
]
Complex B
Other components
Prp19-related factors
PBANKA_1450500
Complex C
PBANKA_1450500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
TPR_2
HAT_PRP39_N
Mad3_BUB1_I
ANAPC3
Motif
Other DBs
NCBI-GeneID:
55152545
NCBI-ProteinID:
XP_034424330
UniProt:
A0A509ATT6
LinkDB
All DBs
Position
14:complement(1955827..1959128)
Genome browser
AA seq
915 aa
AA seq
DB search
MDELGNVYDCDMLFNDDDINLEKYGNNCEDTAGLINEENESYLKNIDFDIKNNMDKISTQ
YLFLYINTYKEKNIKNVKKLYNIKFYDIHLRKDEYPLLEAEHNLVEYCIKELINEKSGFD
TLKNNNNNTNYKDDEHKYYLLKIYETILKYFPYSFKIWYYYIKDSIEMISDIYYNNKKEY
EKINNIFENCLLYLYNFKSIYIMYIQFLYIQRNVKKIREVFNKSLQNVCLNQHEDIWSYI
LNFVSKIDSKLINYEYIKRYVTIYPEQIIFLFNHYIKYKMHKQALSTFFYILNNDDINFD
LGDKTKYDLYKEIFNLINSSKTLNNDVMEILRTNLDIFKNYENITSIYILLANNFVYEGR
WNKAMDIYEEGIYESYSINDFSVLFDNYIETLKILIDLKIRGQDGNSIKLANKVDQEEET
DEDESEMSTSDDFIIDLYMDKINYLLDKRKIYIADIKLKNNKKNVYAWLNKIDVIDNENE
KINLFNQCLKFFQDNDYIGKLSDVYITYAYYYYNNKNYKESVNVFQKAIEDKNIKSLNEM
ANIFCSWIELEILEQNYNEALQIARLSIDFNKSNNFDKKGFQIVSYNSDRNLIKKDNSTY
GFQNIQNKFNLKNSIKLVCLVLDMEINYGTVETALCMFDLLYHSKSITIKMVLSFANYLY
EQKYFNECFKVYEKAISIFHYPYLYPIYVNYINKYIERYKDKNISYVRELFKQAIYGIDN
KTYVPKEFSKYIFLMYISFEENYGFLKKSLSIYKEAIPFLEEQDKIKFYKVYISKISKSY
GIHKAREAFEEAIQTLTDDQAREICLLYIDMEYKLNEYDRVRALYVYTAQFTNPLKFPQF
FQDWREFEVLYGNEHTFRDMIRIKRSVRSMFTNSNSASFKDKHEETEEGKIEDTKRKLME
IIENETGENKKLKKK
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggacgaattaggaaatgtatatgattgtgatatgttgtttaatgatgatgatataaac
ttagaaaaatatggaaataattgtgaggatactgcaggattgataaatgaggaaaatgaa
agctacttgaaaaatatcgattttgatataaaaaataacatggataaaatttcaacacaa
tatttatttttatatataaacacatataaagaaaagaatataaaaaatgtaaaaaaatta
tataatataaaattttatgatatacatttaagaaaagatgaataccctctgttggaagcc
gaacacaatcttgtagaatattgtattaaagaactgataaatgaaaaaagtggatttgat
actttaaaaaacaataacaacaatactaattataaagatgacgagcataaatattattta
ctaaaaatttatgaaacaattttaaaatattttccttacagctttaaaatatggtattat
tatataaaggatagtattgaaatgattagtgatatatattataataataaaaaagaatat
gaaaaaataaataatatttttgaaaattgtcttttatatttatataattttaaaagtata
tatattatgtatatacaatttttatatattcaaagaaatgtaaaaaaaataagagaagtt
tttaacaaatctttacaaaatgtatgtctaaatcaacatgaagatatatggagctatata
ttaaattttgtatcaaaaatagatagtaaattaattaactatgaatatataaaaagatat
gtcacaatatatcctgaacaaatcatatttttatttaatcattatattaaatataaaatg
cataaacaagctttaagcacgtttttttatatattaaataatgatgatataaatttcgat
ttaggagataaaactaaatatgatttatataaagaaatatttaatttaattaattcatcg
aaaacgttaaataatgatgtcatggaaattttaagaacaaatttggatatttttaaaaat
tatgaaaatattacttcgatatatattttattggctaataattttgtctacgaaggaaga
tggaataaagctatggatatttatgaagagggaatatatgaatcgtattctattaatgat
ttctctgtgctttttgataattatatagaaacattgaaaattttgatagatctcaaaata
agaggccaggatggaaattccatcaaactagccaataaggttgatcaagaagaagaaaca
gatgaagatgaaagcgaaatgagtacttctgatgattttattattgatttatatatggat
aaaataaattatttgctggacaaaagaaaaatatacattgcagatataaaacttaaaaat
aataaaaagaatgtatatgcatggttaaataaaatagacgttatagataatgaaaatgaa
aaaataaatttatttaatcaatgtttaaaattttttcaagataatgattatattgggaaa
ttaagtgacgtatatattacttatgcttattattactataacaataagaattacaaagaa
tcggtaaatgtttttcaaaaagctatagaagataaaaatataaaaagtttaaatgaaatg
gcaaatatattttgttcatggatcgaattagaaattttagaacaaaattacaatgaagca
ttacagattgctaggttatccattgattttaataaaagtaataattttgataaaaaggga
tttcaaatagttagttacaactctgatagaaacttaattaaaaaggataattcaacttat
ggtttccaaaatatacaaaataaatttaatttaaaaaattctataaaattagtatgttta
gtattagacatggaaataaattatggaactgttgaaacagctttatgcatgtttgattta
ttatatcattctaaaagcattactattaaaatggttttgtcatttgctaattatttatac
gaacaaaaatattttaatgaatgctttaaagtatatgaaaaggctatttcgattttccat
tatccatatttatacccaatttatgttaattatattaataaatatattgaaaggtataaa
gataaaaatatttcgtatgtacgtgaattatttaaacaagccatatatggaattgataat
aaaacatatgtccctaaagaattttcaaagtacatttttttaatgtacatttcgtttgaa
gaaaattatggatttttgaaaaaatcattaagtatttacaaagaggctattccatttttg
gaggagcaggataaaattaaattttacaaagtgtatatttcgaagatatccaaatcatat
ggaattcacaaagctagagaggcatttgaagaggctattcaaactctgacagatgaccaa
gctagagaaatttgtttgttgtatattgatatggaatacaagttaaatgaatatgatcga
gtaagagcactttatgtatacactgctcagtttacaaatccattgaaattcccccaattt
ttccaggattggagagaatttgaggtattgtatggaaatgagcacacatttagagatatg
ataagaattaaaagaagtgtgcggagtatgtttacaaattcaaatagtgcttcatttaag
gataagcatgaggaaacagaagaagggaaaatagaagatacgaaaagaaaattaatggaa
attattgaaaatgaaacaggtgaaaataaaaaattaaaaaaaaagtaa
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integrated database retrieval system
