Pseudomonas beijingensis: PSH84_04605
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Entry
PSH84_04605 CDS
T10327
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbej Pseudomonas beijingensis
Pathway
pbej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH84_04605 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbej03019
]
PSH84_04605 (rne)
03009 Ribosome biogenesis [BR:
pbej03009
]
PSH84_04605 (rne)
Enzymes [BR:
pbej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSH84_04605 (rne)
Messenger RNA biogenesis [BR:
pbej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSH84_04605 (rne)
Ribosome biogenesis [BR:
pbej03009
]
Prokaryotic type
rRNA processing factors
PSH84_04605 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
DUF8501
Motif
Other DBs
NCBI-ProteinID:
WLI46206
LinkDB
All DBs
Position
complement(985763..988948)
Genome browser
AA seq
1061 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVA
APVAAPAAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPAATERPARNEERRNGRQQ
TRNRNGRRDEERKPREERAPREERAPREPREERQPREAREEAPAVAREERAPRPPREERQ
PRAPREDRKPRGEREERVRELREPLDAAPAVAAATAEERPARQPREERAPRPPREERQPR
AEQAAAVASEEEVLNAEEQLQEDGQDTAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEG
SEESESTENAEAPSAADLAAGLAVTAAVASSAISAPAEAQAHEQAERATAAVESAPVEAP
VVEATTPVEATASPEVELAPAPEAQPETEVAAEPAPVVEAPVVAAEPVVEAPAEEKAPEP
VREEQTAFNWTAEPAAPAPVAEPEPAPEPVKAVEPEVVEPAPVVEAPVVAEATAVVEEPA
PASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAQAPAAEPAPVVEEVAEAAPA
PVAETPVESAPTFDEPQHTAEEIAPRHTEALEKEHEPKPHA
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgc
ctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaacatctataaa
ggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctctgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaggctcctgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaagtcgaa
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgccgtatcgaaggc
gaagagcgcaacgaactgcgtgaagccctgaacggcctggttgccccggctgacatgggc
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgttccgcgccgttc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggtgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcattcgc
caggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtcgaactgccg
tccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcc
gccgaagagatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccaacgcgccgtggaagaaaaagtccgcgaatgc
ctggaagctgaccgcgctcgcgtacaggtcggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtttgcccgcgt
tgcaacggcaccggcatcatccgtgacgtcgagtcgctgtccctggcaatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaagtgccgatcccg
gtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgcgctcgtatcgtcatcctgccgaacgatcacctcgagacgccgcacttcgaagtgcag
cgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgaaatcgctgct
gccgctgccgaagtggaagaagtccagccggccgccgccactcgcaccctggttcgccag
gaagccgcggtcaagactgctccggcccgcgccaacgctccggttccgaccgaagtggcc
gctccggttgccgccccggccgcagcagccccggaaccgagcctgttcaaaggcctggtg
aaatcgctggtcagcctgttcgccaccaaggaagaacccgctgccccggccgtcgtcgcc
aagcctgccgctaccgagcgccctgcccgcaacgaagaacgccgcaacggtcgccagcag
acccgcaaccgcaacggtcgtcgcgacgaagagcgcaagcctcgcgaagaacgtgcaccg
cgtgaagaacgcgcgccacgtgagccgcgtgaagagcgccagccgcgcgaagcccgtgag
gaagcgccagccgtagcccgcgaagaacgcgcaccgcgtccgccgcgtgaagagcgtcaa
ccacgcgcaccgcgtgaagatcgcaagccacgtggcgagcgtgaagaacgcgttcgcgaa
ctgcgcgagcccctggatgccgccccggccgttgcggctgccaccgctgaagagcgtccg
gcccgccagcctcgtgaagaacgcgcaccgcgtcctccacgtgaagaacgccagccacgc
gccgagcaggcggccgccgtagccagcgaagaagaagtgctgaacgccgaagagcaactg
caggaagatggccaggacaccgccgaaggcgatcgtccacgccgccgctcccgtggccag
cgtcgtcgcagcaaccgtcgtgagcgtcaacgcgacgccaacggcaacgtgatcgaaggt
tcggaagagtccgaatccaccgagaacgccgaagcgccaagcgctgcggacctggccgcc
ggcctggccgtaactgcggccgttgccagcagcgcgatcagcgccccggccgaagcccag
gctcacgaacaagccgaacgcgccaccgctgcagtggaaagcgcgccggttgaagcgcca
gtggtcgaagccactaccccggtagaagccaccgcctcgccagaagtggaactcgcaccg
gcccctgaagcccagcctgaaactgaagtcgccgccgagcctgcaccggtcgtcgaggct
ccagtggtcgctgccgaaccggtcgtcgaagcaccggccgaggaaaaggcacccgagcct
gtccgcgaagagcagactgcgttcaactggaccgccgagccagccgcaccggcccccgtt
gccgagccagaaccggcaccagagcccgtgaaagcggtcgagccagaagtggtcgagcct
gctccagtggtcgaagcgccggtggttgccgaagccaccgcagtggtggaagagcctgca
cctgccagcgccctgaccgcgaatggccgcgcgccgaacgatccgcgtgaagtgcgtcgt
cgcaagcgtgaagccgagcgtctgcagaaggaagccgaacaagctgccgctgccgccgct
caagcgcctgctgccgagcctgcgccagtcgtggaagaagtcgccgaggcagcccctgcc
ccggtcgctgaaaccccggttgaatcggctccgacgttcgacgaacctcagcacaccgct
gaagaaatcgcgccgcgtcacactgaagccttggaaaaagagcacgagcctaaacctcac
gcctga
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