Pseudomonas beijingensis: PSH84_12005
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Entry
PSH84_12005 CDS
T10327
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pbej Pseudomonas beijingensis
Brite
Enzymes [BR:
pbej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSH84_12005 (hrpA)
Messenger RNA biogenesis [BR:
pbej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSH84_12005 (hrpA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WLI47520
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Position
2630737..2634648
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARK
ASLPVIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKDPADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLGANTRLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTATQYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQAPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQL
AESAKFLRGKLPGLTELGLLYRDLGRIDGLVEDILLASLDSCVLEGETSLPRDGAALAAL
AERKRGGWTEHAERLARLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQARASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLGKQWGLVEG
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagctcccgctatcgacaagctgctgaaaaacctcgaccacgccatgctc
gccgaccgtcaccggttgcggcgccagttgctcgagctgcgcaagaaacccgacgaggcc
aagctggcccagtgggtgacgcgcatgcaggcgtcgtgcgaccaggtgctggcgcgcaag
gcgagcctgccggtgattcgctacgacgacaatttgccgatcgccgccaagcgcgacgaa
atcaaggaggcgttgctcaagcaccaggtgctgatcatcgccggcgagaccggctcgggt
aaaaccacgcagttgccgaagatctgcctggaaatcggtcgcggccagcatggcttgatc
ggccacacccagccgcgtcggatcgccgcccgcagcgtcgcaagccgtgtggcagaggaa
ctggccacgccgttgggggcgctggtgggttatcaggtgcgcttcgaagaccaaagcgac
gccaataccctgatcaagctgatgaccgacggcatcctgttggccgagacccagaacgac
cgttacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagtctgaat
atcgacttcctgcttggctacctcaagaccctgctgccgcgccgtcccgacctgaaagtc
atcatcacctcggcgaccatcgatctggaacgtttctccaagcacttcgacgacgcgcct
atcgtggaagtctccggtcgcaccttcccggtggaaacctggtatcgcccgctgaccctg
gagcaggacgaggagggcaatcgggtcgaggacgacttgaccgtcgaccaggcgatcctc
gccaccctcgatgaaatcgccgcctatgagcgcagcgagcgccgcagccccggggatgtg
ctggtgttcctgccgggcgagcgggagattcgcgacgcggcggagatgctgcgcaaggcc
cagctcaagcacaccgagatcttgccgctgtatgcgcgattgtcgccggccgagcaacaa
cggatcttccagtcccacccgggccgtcgggtggtgctggcgaccaacgtcgccgaaacc
tcgctcaccgtgccgggcatccgctacgtgatcgacagcggtaccgcgcgcatcagccgc
tacagctatcgggccaaggtccagcgcctgcccatcgaggccatttcccaggccagcgcc
aaccagcgcaagggtcgctgcgggcgggtcgagccggggatttgcgtgcggctgtacagc
gaagaagattttcttgggcggccggaattcaccgacccggagatcctgcgcaccaacctg
gcggcggtgatcctgcagatgctgcacctgcgcctcggcgagatcaccgatttcccgttc
atcgagccgccggatggcaaggccatcagcgacggcttcaacctgctgcaagaactctcg
gcggtggaccgcaacagtcagctgaccccgctcggtcggcagttggcgcgcctgccggtg
gacccacgcatgggccgcatgctgctggaagcggcgaagctgggcagtttgcaggaagtg
ttgatcgtcgccagcgccatgtcgatccaggacccgcgcgagcgtccgccggaacgccag
caagcggccgaccaggcccacgctcaatggaaagacgccgactcggacttcgccgggctg
gtcaatttgtggcgcggtttcgaagagcagcgccaggccctgaccgccagcccactgcgc
aactggtgccgcaagaacttcctcaattacctgcgcctgcgtgagtggcgtgattcccat
cgccagttgagtttgatctgccgcgacatgcagttgagcctcaacaaagacccggccgac
tacccgaagctgcacaaagcggtgctgtcgggtctgctcagtcagatcggccagaaaacc
gaagatggcgattacctcggcgctcgccagcggcggttctgggttcacccgtcgtcgggc
ctgggcaaaaagcgcccgcagtggctgatgaccgccgagctggtggaaaccaccaagctg
tacgcgcgcatggtggccaagatcgaaccggactggatcgagccgttggccgggcacctg
atcaagaaaaaccacttcgaaccccactgggagaagaagcgcgggcaagtggtggcctat
gagcagatcacgctgttcgggctgattgtcgtcggtcggcggccggtgcactacgggcca
gtggacccggtggtgtcgcgggagttgttcatccgcgaggcgctggtgcgcggcgagatc
cagtccaaggccaagtgcctgggcgccaatacccgcttgctggagcaactcgacgagctg
gaagccaaggctcgtcgccgcgacatcctggcggacgaggaaaccctgtttgcgttctat
gacgcgcgtttgccggccgagatccaccagaccgcgacgttcgacagctggtaccggatc
aacagccagaaagacccgcaattgctgatcatgcgcgaggaagacgtgctggcccgcgaa
gccagcgaggtcaccgccacgcagtaccccgacaccttgcgcgtcggtgacctgaccttg
ccgctgagctatcacttcgagcccaatcacccgcgcgacggggtgacgctgcgggtaccg
gcgccgctgctgccaatgctgccgccggaacgcctggaatggttggtgccaggaatgatc
gaggccaaatgcatcgccctggtgcgcaacctgcccaaggccttgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggcggcgctgcaacgcatcaccttcgctgagggctcgttg
ccgcaatccctgggccgcgaactgctgcgcatgaccggtgcgcgggtcagcgacgaagcc
tgggccgaagcggcccagcaggtggaaagccatctgcgcatgaacctggaaatcgtcgac
ggccagggcaagttcctcggcgagggccgcgacctggccgagttgacggcacgctttgcc
gaagccagccaggcggccttggccgtgccgcaaacggcaaaaagccaggcaccggtggag
gcgaaggtcttcgcaccggtggccgagaaaacccagcagaagatcgccgggctgtcgatg
acggtttatccggcgctggtggaagagggcggcgtggtcaaggaagggcgtttcccgacg
ccggccgaagccgaattccagcatcgccgcgccttgcagcgcttgctcatgcagcaattg
gccgaatcggcgaagttcctgcgcggcaagctgccagggctgacggaactgggcctgctg
taccgcgatttgggtcgcatcgacggtctggtggaagacatcctgctcgccagcctcgac
agttgcgtactcgaaggtgaaacgagcctgccccgtgacggcgccgccctggcggccctg
gccgagcgtaagcgcggcggctggaccgagcacgccgaacgcctggcgaggctgaccctg
gacatcctcaagctctggcacggcctgcaaaaacgcttcaagggcaagatcgacctggcc
caggccgtggcgctgaacgacatcaagcaacaactcagccacctggtgtacccaggcttc
gtgcgggaaaccccgcatcagtggctcaaggaactgccgcgttacctcaaggccatcgag
caacgtttcgagaagctcggcagccaggtgcagaaagaccgggtctggagcggcgaactg
tcgaacctctgggctcaataccaggcccgcgccagcaagcacgcccaggaaggcaagcgc
gacccgcaactggagttgtaccgctggtggctggaggaataccgggtgtcgctgttcgcc
cagcagttgggtaccaaggtgccgatttccgacaagcgcctgggcaagcagtgggggttg
gtggagggttga
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