Pseudomonas beijingensis: PSH84_19415
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Entry
PSH84_19415 CDS
T10327
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbej Pseudomonas beijingensis
Pathway
pbej03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSH84_19415 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbej03400
]
PSH84_19415 (ligD)
Enzymes [BR:
pbej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSH84_19415 (ligD)
DNA repair and recombination proteins [BR:
pbej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSH84_19415 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WLI43736
LinkDB
All DBs
Position
complement(4321227..4323854)
Genome browser
AA seq
875 aa
AA seq
DB search
MSSKTLDDYNRMRDFAATPEPAAKRSRRSPKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDQAARAESEYDVVEAEPD
SVLSDRTLVPKRRGKATAAKAVKQPEKAAQPKSPKRTSKTTLSGAVAGPLPETLKPELAT
LVDSAPDGDWLYEIKFDGYRVMARIENGDVRLLTRNGHDWTHKLPKQAEALAGLGLESAW
LDGEMVVANDQGVPDFQALQNAFEVGSSGKIAYYLFDMPYLNGMDLRKVPVQERRVALAA
VLEPNQSPLLRFSDAFEDPPEALLNSACQMQMEGLIGKRVGSAYVSRRSNDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLPLET
KKAAVVNPPTGYEAKGVHWLEPTLLAEVAFAEMTKEGSVRHAVFHGLRNDKPAKAITQEL
AKPVKKTTATKKTSSKDEPDAKPDKSKDKAKSQTKAKAPAMNGKVRITHPERVIDASSGT
TKLQLAEYYASVAEFILPELKDRPVALVRAPEGIAGELFFQKNSERLAIPGIVSLDKELT
GQPVMIINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQ
LTLSVLDELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAV
SGPKNRVGRIFIDYLRNGLGATTICPYAARTREGLPVSVPIFREEMAELKGANLWNVHNV
HERLAQVGHEPWAGLKKTRQSITAEMRRRIGMRKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaagaccctggatgactacaaccgcatgcgagatttcgccgccaccccggag
ccggcggcgaaacgttcgcgcagatcgccaaagaccgcccacgccttgcagttctgcatt
caaaagcacgatgcctcgcgattgcattacgacttccggctggagctggacggcgcgctc
aagagctgggcggtgcccaagggaccctccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgttggactacgcgacgttcgagggcagcatccccgaaggccac
tacggtgccggtgacgtgatcgtctgggaccggggtgtctggattccccagggagatccc
cacgaggcctatgaaaaaggccggctcaagttcgagctgcaaggcgaaaaactcagcggc
ttgtggaacctggtgcgcactcacatgcctggcaagcaggaacagtggttcctgatcaag
catcaggaccaggccgcccgtgccgaaagcgaatacgacgtggtcgaagccgagccggac
agtgtgctcagcgatcgcacccttgtgcccaagcgtcgaggcaaggccaccgcggcgaaa
gcggtgaagcaaccggaaaaagccgcccagccgaaatcgccgaaacgcacctcgaaaacc
accctcagcggtgcggtcgctgggccgctgccggaaaccctcaaaccggaactggcgacg
ctggtggacagcgcacccgacggcgattggctttatgagatcaagttcgacggttaccgg
gtcatggcgcggatcgaaaacggcgacgtcaggctgttgacccgcaacggccatgactgg
acccacaagttgccaaagcaggccgaggccttggctgggctggggttggaatcggcctgg
ctcgacggtgaaatggtggtcgccaacgatcagggcgtgccggacttccaggccttgcaa
aacgcctttgaggtcggcagcagtggcaagattgcctattacctgttcgatatgccttat
ctcaacggcatggatttgcgcaaagtgccggtgcaagaacgccgggtggcattggccgcc
gtgctggaacccaatcaaagccccttgttgcggttttccgatgcctttgaggacccccct
gaagcgctgctcaacagtgcctgccagatgcagatggaagggctgatcggcaagcgcgtc
ggcagcgcctatgtgtccaggcgcagcaacgattggatcaagctcaaatgcaagaatcgc
caggaattcgtggtagtgggtttcagcgatcccaaaggtgcccgcagtgccttcggtgcc
ttgctgctggggctgcatgacgctgacagcggccaattgcgttacgccggcaaggtcggc
accggtttcaacgaaactaccctcaagagcatctaccagcaactgctgcccctggagacg
aaaaaggccgccgtggtgaacccgcccaccggctacgaagccaagggcgtgcactggctc
gaaccgacgctgctggccgaagtggcctttgccgaaatgaccaaggaaggctcggtgcgc
catgcggtcttccatggcttgcgcaacgacaagccggccaaggccatcacccaggagctt
gccaaacccgtgaaaaaaaccactgcgacgaagaaaaccagcagcaaggatgaacctgac
gcgaaaccggacaagagcaaggacaaggcaaagtcccagacaaaagccaaggcgccggcc
atgaacggcaaggtccgcatcacccatccggagcgggtcatcgacgccagcagcggcacc
accaaactgcagttggccgagtactacgccagcgttgccgaattcatcctgccggaactg
aaggatcgcccggttgccctggtccgggcgccggaaggcatcgccggtgagctgtttttc
cagaagaactccgagcgcctggcgattcccggcatcgtcagcctggacaaggaactgacc
gggcagccggtgatgatcatcaacaacgccgaggcgctgattggcgcggtgcagatgagc
acggtggaactgcacacctggaatgccacctccgtcgacctggacaagcccgaccgcttc
gtcctcgaccttgacccggacccggcattgccctggaaaagcatggtcgaggcgacgcag
ctcacgttatcggtgctcgatgaactggggctcaaggcgttcctcaagaccagcggcggc
aagggcattcatgtggtggtgccgttgacacgcaaactgggctgggatgaggtcaagggc
tttagtcatgcgattgtcagtcatatggccaagctgctgccggaccgtttttcggcggtg
tccgggccgaagaaccgggtagggcggatcttcatcgattacctgcgtaatgggttgggc
gccactaccatctgcccctacgccgcccggactcgggaagggttgccggtttcagtgccg
atctttcgtgaggagatggctgagctcaagggggcgaatctgtggaatgtgcacaatgtt
catgagcgtttggcgcaggtgggtcatgagccttgggctgggctgaagaagactcggcag
agtattacggctgagatgcgtcggcgtatcggcatgaggaaggcgtaa
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