Pseudomonas beijingensis: PSH84_22215
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Entry
PSH84_22215 CDS
T10327
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbej Pseudomonas beijingensis
Brite
KEGG Orthology (KO) [BR:
pbej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbej03032
]
PSH84_22215
03400 DNA repair and recombination proteins [BR:
pbej03400
]
PSH84_22215
Enzymes [BR:
pbej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSH84_22215
DNA replication proteins [BR:
pbej03032
]
Prokaryotic type
DNA Topoisomerases
PSH84_22215
DNA repair and recombination proteins [BR:
pbej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSH84_22215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WLI44245
LinkDB
All DBs
Position
5010853..5011908
Genome browser
AA seq
351 aa
AA seq
DB search
MPDTLTPDALPADLHYVDDTAPGITRKKLRGKFCYFDPLDRRITDAAEIQRINALAVPPA
YTDVWICTDPRGHLQATGRDARGRKQYRYHARWREVRDADKYSRMLEFGRALPRLRKRLE
EILATPGFSRDKVMATVITLLDVTLIRVGNPQYARANHSYGLTTLRNKHVEINGSAIAFQ
FRGKSGVEHQITVKDRRLARIIKRCQEIPGQNLFQYLDEHGERHSISSSDINAYLKTLTG
ADFTAKDYRTWAGSAAALAGLRALRWETETEAKRHVTEMVRQVSRQLGNTPTVCRKCYIH
PAVVEGFLLGALKALPKPRARKGLSEEEAGLTLFLQRMTRAAEACEQAQSG
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaccctgacaccggatgcactgccggccgacctgcattacgtcgatgacacg
gccccaggcatcacccgtaaaaagctgcggggcaaattctgttatttcgacccgctggac
cgacgcatcaccgacgcggccgagatccagcgcatcaatgccctggcggtgccgccggcc
tataccgatgtctggatctgcaccgacccccgtggtcatctccaggccactggccgcgat
gcccgcgggcgcaagcagtaccgctaccatgcgcgctggcgtgaggtgcgcgatgcggac
aagtattcacggatgctggaattcggacgtgccctgccgcgcctgcgcaaacgcctggaa
gaaatcctcgccacgcccggcttcagccgcgacaaagtcatggccacggttatcaccctg
ctggacgtaaccctgatccgcgtcggcaacccccaatacgcccgcgccaatcactcctac
ggcctgacgaccctgcgcaacaaacacgtcgagatcaacggcagcgccatcgccttccag
tttcgcggcaaaagcggcgtcgagcaccaaatcaccgtgaaagaccggcgcctggcacgg
atcatcaagcgctgccaggagattcccgggcagaacctgttccagtacctggacgaacac
ggcgagcggcactccatcagttcttcggacatcaacgcctacctcaaaaccctcaccggc
gccgatttcaccgccaaggactaccgcacctgggctggcagcgcagccgctctggccggg
ctgcgggcgctgcgctgggaaaccgagaccgaagccaagaggcacgtcaccgagatggtc
aggcaggtctcccgacaactgggcaacacaccgaccgtctgtcgtaaatgctacatccac
ccggcggtggtggaaggctttctgctcggcgcgctgaaggcattgcccaaaccccgggcc
cgcaaaggcctcagcgaagaagaagccggactgacgctattcttgcagcgtatgacacga
gccgccgaggcgtgcgaacaggcacaatcgggttga
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