Pseudomonas beijingensis: PSH84_26620
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Entry
PSH84_26620 CDS
T10327
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbej Pseudomonas beijingensis
Pathway
pbej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSH84_26620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbej03019
]
PSH84_26620
Enzymes [BR:
pbej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSH84_26620
Messenger RNA biogenesis [BR:
pbej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSH84_26620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WLI45015
LinkDB
All DBs
Position
5986201..5988069
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AA seq
622 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDV
DNFGNRVDYVPQQKPAQGRGRRPGAPAQGAGAGAPRSGQPQGRQNGPRNSNGSSTGTPPA
KRSGPRNGAPRDGQARRDDTRPRRPARDDQPRQEPAVQNPRSNQPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tatacccagcctaccccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcgcagacaggtactggtaaaaccggcggtttcgcccttccgattctg
gagcggttgtttcccaacggtcacccagacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactggcggcccaggtacacgagagcttcaag
gtctacgctcgcgacctgaagttcgtcagcgcctgcatttttggcggcgtcggcatgaac
ccccaggtccaggccatgtcccgtggcgtcgatgtactggtggcctgccccggtcgcttg
cttgacctggccggccagggcagcgtcgacttgtcccacgttgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagttctcgcccgc
ctgcccgccaagcgccagaacctgctgttttcggcgacgttctccaaggacatcaccgac
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgaacagcgtgtgttccgcctggcggccagccacaagcgtgccttgctg
gcgcacctgatcaccgctggcgcctgggaacaggtcctggtgttcacccgtaccaagcac
ggcgccaatcgcctggccgagtacttggacaagcatggcctgccagccgtggcgatccac
ggcaacaagagccagaacgcccgtaccaaggccctggccgatttcaaggccggcgaagtg
cgcatcctcgtggccaccgacatcgccgcccgtggcctggacatcgaccagttgccccac
gtggtcaacttcgagttgccgaacgttgatgaagattacgttcaccgtatcggccgtacc
ggccgggccggtcgttcgggcgaagcgatctcgctggtcgcgccggacgaagaaaagctg
ctcaaaagcatcgagcgcatgaccaagcagaaaattgccgacggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtacgcgaacgtccggatgtgcgcaat
ccgcgcaatgcccgtggcccacgcggtgacggcccgaacggcggtggtggtggcggcggt
cgcaaagacaaaggcaaggacaagggcaaggaaaaatcggccagcaacagcaatggccgc
ggcgaacgccctgcccgcgagcagaagccccgcgaaggcaccccggcccgtgagcagcag
cgcccggccccgcgcgccgcagccgatcgtgctccagacgagttcctggacgacgacgta
gacaacttcggtaaccgcgtcgactacgtgccgcagcagaaaccggcccagggccgcggt
cgtcgcccaggtgccccggcacagggcgccggtgcaggcgctccgcgcagtggccagcca
caaggccgccagaacggtccgcgcaacagcaacggctcgtccaccggcaccccgccggcc
aagcgcagcggcccacgcaacggcgccccgcgtgacggccaggcccgtcgcgacgacacc
cgcccgcgccgtccggcccgtgacgaccagcctcgccaggaacccgccgtgcagaacccg
cgcagcaaccagccgaagatcatgcacaaggaatcgaaagccgatcgcttcccgacgcct
gagcagctggatcaactgccaagccgcccacggggcgaaaaaccggcattgctgacgcgc
aatcgctga
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