Podospora bellae-mahoneyi: QC761_122010
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Entry
QC761_122010 CDS
T09795
Symbol
SKI2
Name
(RefSeq) Antiviral helicase ski2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pbel
Podospora bellae-mahoneyi
Pathway
pbel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC761_122010 (SKI2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbel03019
]
QC761_122010 (SKI2)
Enzymes [BR:
pbel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QC761_122010 (SKI2)
Messenger RNA biogenesis [BR:
pbel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
QC761_122010 (SKI2)
mRNA degradation factors
3'-5' decay
Ski complex
QC761_122010 (SKI2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AbiEi_3
Ssol_1539-like_2nd
6PF2K
Motif
Other DBs
NCBI-GeneID:
87894948
NCBI-ProteinID:
XP_062736013
LinkDB
All DBs
Position
1
Genome browser
AA seq
1338 aa
AA seq
DB search
MIWRGKSMKLRPCCLPGWSRPCLGTTSHLELGRKYHLVFASSGRDHHTTITAEMATDLHD
AIQRLHLDDNSTFDAIDDILDHKVVKPPKKQDPDELRAELERKFLSPSATFSDEWLDKLQ
QRWDTPMDYSLLFSIAPSQTRTVTRFVRHGLEGRVTGYRNVTVPASHATAKNSTSMTRKP
ASRSEFVRGGAGFFPFAPGGLEGIESTAALEDQLRASAAIEEADSRKKLERVIKLGSGGL
LEVAPGVSRGIDFTKRRKVADEEAEKQAKEVEEVLDQEPEAAPDQEDEDADKAPTNGASD
EGEEEEDLEDIDSILPVEFPALEPHGKLAASSARKAGREWAHMVDINRPMPNFRELVPDP
AREWPFELDNFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIK
ALSNQKFRDFRQTFAEVGILTGDVQINPEASCLIMTTEILRSMLYRGADIIRDVEFVIFD
EVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTHEFASWVGRTKQKDIYVISTPKR
PVPLEHYLWANKNIYKIVDSEKRFVEKGWKDANAAMQGKDKPPKAIEAAPARGGGNQRGG
GRGGQQRGGNQQRGGGRGGGQQQRGRGGPPRASHNPGHMGRTGRPGGFTSAAQDKNLWVH
LVQFLKKQTLLPACIFVFSKKRCEENADALSNQDFCTAQEKSAIHMTIEKSIARLKPEDR
TLPQIVRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETFAMGLNLPTRTV
VFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIVPPGGDEAPPVTDLRQMIL
GEPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKLSEADLA
KVKRDSCQICDVHMDDCHQAGEDFKQLTEELYRALLNIPIGRKMFTPGRLIVWMKEGVRT
PGLLLAEGASTKSSATVPMLHVLEIRTNREIRNDTDLLPFVPSLRKYYTSLPQAKKHIGT
KTLHVPLSDLVCLTKYVTKGILPDIFGSGEGYQKAKDKLQTICRTWASDHWDEMDLGRIK
SLAIHDIINKRREAEVKLTKSAAPLCTFFLKHYAMCHDQWLIKTNIDQLRQALSNQNLQL
LPDYEQRIQVLKDLRFIDEETRIQLKGKVACEIHSGDELVLTELILENVLADYEPAEIAA
LLSAFVFQEKTDSIPKLTHNLEKGMKTIVELSEKVNAVQTLHQVIQTSEESNDFVSKPRF
GLMEVVYEWAKGVSFKNITNLTDVLEGTIVRTISRLDETCREVKNAARIIGDPELYQKMT
VAQELIRRDITAVASLYM
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgatttggcggggcaagtcgatgaagctgcgaccttgctgtcttccaggctggagtcgt
ccatgtttgggcacaacatcacaccttgaactcggtcgaaaatatcacttggtttttgca
agcagtggacgagaccatcacactaccattaccgccgaaatggcgaccgatctccacgat
gccatacaacggcttcacctggacgacaattccacattcgatgcaattgacgacatcctt
gaccacaaggtagttaagccgcccaagaagcaagaccctgatgagctgcgcgccgaactc
gagcggaaattcctgtcgccatcggccacattctcggacgagtggctcgacaagcttcag
caacgatgggacaccccgatggactactccctgctcttcagcattgcgcccagccagacc
cgcaccgtcacccgcttcgtgcgtcatgggcttgagggtcgggtcacaggctacaggaat
gtcactgttccggcctcgcatgccacggcgaagaacagcacgtccatgactaggaaaccc
gccagcagatctgaatttgtccggggtggcgccgggttcttccctttcgctcctggtggt
ttggagggtatcgagtcaacagctgcgttggaggatcagctgcgggcttcagctgccatt
gaggaagctgacagcaggaagaaactagaacgtgttatcaagcttggatccggtggtctg
cttgaggttgctccgggtgtctccagaggtatcgactttacgaaaaggagaaaggttgcg
gatgaagaggcggaaaaacaggcgaaggaagtcgaagaggtcttggatcaggagccggag
gcagctcctgaccaagaggatgaggacgccgacaaagccccaacgaatggtgcttcagac
gagggcgaggaagaggaggatctcgaggatattgactccattcttccagtggagttccca
gctctggaaccccatggcaagcttgcagcatccagcgctagaaaggcaggccgcgaatgg
gcgcacatggtggatatcaacagaccaatgcccaacttccgggagctggtgccagatcca
gccagagaatggccattcgaactcgacaacttccaaaaggaagccgtctatcatcttgaa
aatggcgactcggtgttcgtcgcagcccatacttctgcaggcaagacagtggtggctgaa
tacgccattgctcttgcggcaaaacacatgacgaaggctatttacacatccccgatcaag
gcgctcagcaaccaaaagttccgcgacttcagacagacgttcgccgaggttggtattctg
actggtgatgttcaaatcaacccggaggccagctgtctcatcatgactacggagattctg
cgcagtatgctttaccgtggagccgatatcatccgcgatgtcgagttcgtcatcttcgac
gaggtccactatgtaaacgactttgagcgtggtgttgtctgggaagaggtcatcattatg
ctaccagagcatgtgtccttgattcttctttctgctactgtccccaacactcatgagttc
gcctcgtgggtaggacgcacaaagcagaaggatatttacgtcatttctacgccgaagaga
cctgtgccgttagagcactatctctgggccaacaaaaacatctacaagatcgtcgactct
gagaagaggttcgtcgagaaggggtggaaggatgcgaatgcggctatgcagggcaaggac
aagccaccaaaggccatcgaggccgcaccagctcggggtggtggcaaccagagaggtggt
ggccgtggaggccagcaaagagggggcaatcagcaacgtggcggcggtcggggtggcgga
caacagcagcgtgggagaggtggaccaccacgcgcgagccacaaccccggacatatgggc
cggacaggccgaccaggagggtttacatctgctgctcaggacaagaacttgtgggttcac
ctcgtccagttcctcaagaaacagactcttcttccggcctgtatcttcgtcttttccaag
aagagatgtgaggagaatgcagatgccctgagcaaccaggacttctgcaccgctcaagaa
aagagtgcgattcatatgacgattgagaagtcgattgctcgtttgaagcccgaggacaga
actctgccccagattgtgcgccttcgagagctgctctcgcgaggtatcgcagtccatcat
ggtggtttgctccctatcgtcaaggagttggtggaaattcttttcgcccagactctggtc
aaggttcttttcgcgactgagaccttcgccatgggcctgaacctgcccacgagaacagtt
gtcttctcgggataccgcaagcatgacggccattctttccgcaatctccttcctggtgaa
tacacacagatggctggtcgggctggtagacgcggtctcgatactgtcggttccgttatc
attgtgcctcctggtggcgatgaagccccccctgtcactgatctccggcaaatgattctc
ggagagcctagcaagctccggtctcaattccgcctgacctacaatatgatcttgaaccta
ctacgcgtcgaagctctgaagatcgaggaaatgattaagcgtagtttctcagaacacgcc
actcaacagctcttacccgagcacgagaaggcggtcaaactatccgaggcagatttggca
aaggtcaagagggattcttgtcagatttgtgacgttcatatggacgactgtcaccaggcg
ggtgaggacttcaagcagttgacagaggagctgtatcgcgcgttgctgaacattccgatt
ggccggaagatgtttacgcctggtcgtctcatcgtctggatgaaggaaggtgtccgcact
cctggtttgttgctcgctgaaggcgccagcaccaaaagcagcgcgacggttccaatgttg
catgttctggaaattagaacgaatcgagaaattcgcaatgacacggacttgctgcccttt
gtgcccagtctacgcaagtactacacgtcactcccccaggccaagaagcatatcgggacc
aagacattgcacgtccccctgagtgacttggtatgcttgacaaagtatgtcaccaagggc
atcctgccagacatctttggcagcggcgaaggctaccaaaaagccaaggacaagcttcaa
accatctgccgcacctgggcctctgatcactgggatgagatggatctgggtcgcatcaag
agcctggctattcacgacatcattaacaagcgccgtgaggcggaggttaagctcacaaaa
tccgccgctccgctttgcacgttcttcttgaagcactacgccatgtgccacgatcagtgg
ctcatcaagaccaacatcgaccagctccgccaggccctctccaaccaaaacctgcagctc
ctccccgactacgagcagcgtatccaggttctcaaggaccttcgcttcattgacgaagaa
acccggatccagctcaagggcaaggtagcctgtgaaattcactctggcgacgagcttgtc
cttaccgagctcatcctcgagaacgtcctcgccgactacgagcccgccgaaatcgccgct
ctgctctcggcgtttgtctttcaagagaagacagactccatcccaaagctgacgcacaac
ctagagaagggcatgaagacgattgttgagctctccgaaaaggtcaatgcggtgcagact
ctccaccaggttatccagacatcagaggagtccaacgactttgtcagcaagcctaggttt
gggttgatggaggtggtgtatgaatgggccaagggtgtcagcttcaagaatatcacgaat
ctgacggatgtgttggagggaacgattgtgcggacgatttcccggttggatgagacgtgc
agggaggtgaagaatgcggcaaggattatcggtgatcccgagttgtatcagaagatgacg
gtggcgcaggagttgatccggagggatattactgctgtggctagtctttacatgtaa
DBGET
integrated database retrieval system
