KEGG   Podospora bellae-mahoneyi: QC761_603890
Entry
QC761_603890      CDS       T09795                                 
Symbol
YSH1
Name
(RefSeq) endoribonuclease ysh1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pbel  Podospora bellae-mahoneyi
Pathway
pbel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pbel00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    QC761_603890 (YSH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pbel03021]
    QC761_603890 (YSH1)
   03019 Messenger RNA biogenesis [BR:pbel03019]
    QC761_603890 (YSH1)
Transcription machinery [BR:pbel03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     QC761_603890 (YSH1)
Messenger RNA biogenesis [BR:pbel03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     QC761_603890 (YSH1)
    U7-dependent histone pre-mRNA processing factors
     QC761_603890 (YSH1)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Anti-Pycsar_Apyc1 Lactamase_B_3 Lactamase_B_2 CHB_HEX_C
Other DBs
NCBI-GeneID: 87900322
NCBI-ProteinID: XP_062729067
LinkDB
Position
6:391654..395271
AA seq 837 aa
MASKRKAAAMASAPVTEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPA
YDGLAALPFFDDFDLSTVDVLLISQNSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYK
WLIQDSVRVGNTSSNPTTQLVYTEQDHLNTFPQIEAIDYHTTHTISGIRVTPYPAGHVLG
AAMFLIEIAGLNIFFTGDYSREQDRHLVSAQVPKGVKIDVLITESTYGIASHVPRLEREQ
ALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGKHAEYQKYPIYYASNLARKCML
VYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKFIRSLKSIDRFEDVGGCVML
ASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPEHIQAVMSRNTGGGR
RGPGRDAEKVLIPRRCTVQEYSFAAHVDGTENREFIEEVAAPVVILVHGEVHNMMRLKSK
LLSLNANKTSKVKVFSPKNCEELRIPFKTDKTAKVVGKLASILQPLSSPEEPQLITGVLV
QNDFKMSLMAPEDLREFAGLTTTTISCKQRMRLSAAGVDLIKWGLEGTFGTIEELPISKK
LSSNGEDHEMKGSGQDVADEELSVDEVLAAYLVMGVITVRHRSNGEVEIEWEGNMLNDGI
ADAVMAVLLAIESSPAAVKRSASKNPHFHSHSFNLPVRNLHSNLSATERLERLMLFLEAQ
FGADNVSPIAEPKLSPVPPPQAKIKSSEGDDEEADASMDVSEDEEHGATQLAQRKEAELA
RLHKLGIPVPGINIRVDKMEAKVWLEGLEIECGNKVFGDRVRAVVERAVEVTAPLWG
NT seq 2514 nt   +upstreamnt  +downstreamnt
atggcctccaagcgcaaagctgccgccatggcctcggctcctgtaaccgaggagcctgtt
gaccccagtgacgagctgatgtttctctgtcttggaggaggcaatgaagttggccgttca
tgtcatatcattcaatacaagggaaagacagtcatgcttgatgccggccaacatcccgcc
tatgatgggcttgcagcccttccgttctttgacgactttgacctgagcactgtagatgtg
cttctcatcagccaaaatagtttccatatcgatcatgctgcctcattaccctatgtcttg
gcaaagacaaacttccgcggtcgtgtgttcatgacacatcccactaaggctatctacaag
tggttgatccaagacagcgtcagagtcggcaacacatcgtccaacccaacaacgcagctg
gtctacacagaacaagaccacttgaacacatttccccagatcgaagccatcgactatcat
acaacgcacaccatctcgggcattcgggtgacgccatacccagccggccatgtgctcggc
gcagccatgtttcttattgagattgcaggtttaaacatcttcttcaccggcgattactcc
cgcgagcaagatcgtcacttggtatcagcccaagtgccaaagggcgtgaagatcgatgtc
ttgatcaccgagtcaacatacggcattgcctcccacgtcccacgtttggagagagaacag
gccctcatgaagtccatcacaggcattctcaacaggggtggccgtgttctgatgcccgtt
tttgccctcggcagagcccaggagcttcttcttattctagatgaatactggggcaagcat
gccgagtatcaaaagtacccaatctactacgccagcaacctcgccaggaagtgtatgctg
gtgtaccaaacatatgttggtgcgatgaacgacaacatcaagcgtctgttccgggagcgc
atggctgaggctgaggcgtctggtgatggtgccggtaagggtgggccgtgggatttcaag
ttcatccgctcgctcaagagcattgataggtttgaggatgtgggcgggtgcgtgatgctt
gccagtcccggtatgctgcagaacggtgtcagcagggagcttcttgagcggtgggctccc
agcgagaagaacggtgttatcatcaccggttatagcgtggagggcacgatggccaagcag
atcatgcaggagcccgaacacattcaagccgtcatgtcgcggaataccggtggaggcagg
cgaggccctggaagagacgccgagaaggttttgattccgaggcgttgcaccgtccaggag
tactcttttgccgcccatgtcgacggcaccgagaacagagagtttattgaggaggttgcg
gcacctgtagtgattcttgtccacggcgaggttcacaatatgatgcgtctgaaatccaaa
ctgctctctctaaacgcgaacaagacaagcaaggtcaaggttttcagccccaagaactgc
gaggagctccgcattccattcaagaccgacaagactgccaaggttgtcggcaagcttgcg
tcgatcctacagcctctgagctcccccgaggagccccagctcatcaccggtgttctcgtc
cagaacgacttcaagatgtcattgatggcgcctgaagatctccgcgaattcgctggtctt
accaccacaaccatctcttgcaagcagcgcatgaggctcagtgccgcgggcgtcgacctg
atcaagtggggcctggaaggaacatttggtaccattgaagagctcccaatctccaagaag
ttgtcttcaaatggagaagaccacgaaatgaagggctctggacaggatgtggccgacgag
gagctgtccgtggacgaagtactcgctgcctatctcgtcatgggcgtaatcacggttcgc
caccggtccaacggcgaggtcgaaattgagtgggaaggaaacatgctcaacgatggtatc
gcagatgcggtaatggccgtcttgctagccatcgaatcctccccagcagcagtaaaacgc
tctgcctccaaaaacccacatttccactctcactcgttcaatctccccgttcggaacctg
cactctaacctctccgctactgaacgcctcgagcgcctcatgctcttcctcgaggcccag
ttcggggcagacaacgtctcccccatcgccgagcccaaactgtcccctgttccccctccc
caggcaaagatcaaatcttccgagggtgacgacgaagaagcagacgccagcatggacgtc
tccgaggacgaggagcatggagctacgcagctggcccagagaaaagaggccgagctggcg
aggctgcacaaactgggcattcccgtgccagggatcaacatcagggtggacaagatggag
gccaaggtttggctggaggggctggagattgagtgtggcaacaaggtgtttggagatcgg
gtgagggccgtggtggagagggccgttgaggttactgcgcctctgtgggggtaa

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