Pseudomonas benzopyrenica: V6W80_02300
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Entry
V6W80_02300 CDS
T10550
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6W80_02300 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pben03019
]
V6W80_02300 (pnp)
03016 Transfer RNA biogenesis [BR:
pben03016
]
V6W80_02300 (pnp)
Enzymes [BR:
pben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V6W80_02300 (pnp)
Messenger RNA biogenesis [BR:
pben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6W80_02300 (pnp)
Transfer RNA biogenesis [BR:
pben03016
]
Prokaryotic type
tRNA degradation factors
V6W80_02300 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_2
DUF7275
Motif
Other DBs
NCBI-ProteinID:
WWM67142
LinkDB
All DBs
Position
485525..487627
Genome browser
AA seq
700 aa
AA seq
DB search
MNPVIKQFKFGEQTFTLETGRIARQATGAVLVSTEDVSVLVTVVGAKQPAVGKDFFPLSV
HYQEKTYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVVCTVVSTN
KKSDPDIAAMIGTSAALAISGIPFAGPIAAARVGYHSELGYLLNPSYEQLQSSSLDMVVA
GTRDAVLMVESEADELTEDQMLGGVLFAHEEFQVAIEAISQFAAEAGKPTWNWQAPAENT
ALIEAVKAEVGEAVSRAYTITIKQDRYAALGALRDQAIAKLAGENGQYSEAEVKETFGLL
EYRTVRQNIVDGKPRIDGRDTRTVRPLQIEVGPLKKTHGSALFTRGETQALVTATLGTAR
DSQLLDTLEGERRDSFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGIQAMLPTQDA
FPYSIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTD
ILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALEQALEARLNILGQMNQV
ISESRAELSENAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGTIKIYGE
TREAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQLSDQRIE
KVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccagtaatcaagcaattcaagttcggtgagcagaccttcaccctggaaaccggc
cgcatcgcgcgccaagcgaccggtgccgtgctggtctccaccgaagacgtcagcgtgctg
gtcactgtggtcggtgccaagcagcctgccgttggcaaggacttcttcccgctgtccgtg
cactaccaggagaagacctacgccgctggccgcatccccggtggttacttcaagcgcgaa
ggccgtccttccgagaaggaaaccctgacctcgcgcctgatcgatcgtccgatccgtccg
ctgttccccgagggcttcctcaacgaagtccaggtggtctgcaccgtggtcagcaccaac
aagaagtccgatccggacatcgccgccatgatcggcacctccgccgccctggccatttcc
ggcatccccttcgctggtccgatcgccgctgcgcgcgtgggctaccacagcgagctgggc
tacctgctgaaccccagctacgagcagctgcagagctccagcctggacatggtcgtggcc
ggtacccgtgacgccgtgctgatggtggaatctgaagccgacgagctgaccgaagaccag
atgctgggcggcgtgctgttcgctcacgaagaattccaggtggccatcgaggccatcagc
cagttcgctgccgaagccggcaagccgacctggaactggcaggcgcctgccgagaacacc
gccctgatcgaagccgtcaaggccgaggtcggcgaggccgtgtcccgtgcctataccatc
accatcaagcaggatcgctatgcggccctgggcgccctgcgtgaccaggccatcgccaag
ctggccggtgagaacggtcagtacagcgaagccgaggtcaaggagaccttcggtctgctg
gaataccgcaccgtgcgccagaacatcgtcgacggcaagccgcgtatcgacggtcgcgac
acccgcaccgttcgcccgctgcagatcgaagtcggcccgctgaagaagacccacggttcg
gccctgttcacccgtggcgaaacccaggccctggtcaccgcgaccctgggcaccgcccgt
gactcgcagctgctggacaccctggaaggcgagcgtcgtgacagcttcatgctgcactac
aacttcccgcccttctcggtcggcgagtgcggccgcatgggcagcccgggccgtcgcgag
atcggtcacggccgtctggcccgtcgtggcatccaggccatgctgccgacccaggacgcc
ttcccctacagcatccgcgtggtctccgagatcaccgagtccaacggctccagctccatg
gcctcggtctgtggtgcctctctggcgctgatggatgccggtgtgccggtcaaggcaccg
gtcgctggtatcgccatgggtctggtcaaggaaggcgaaaagttcgcggtcctgaccgac
atcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtactgccaag
ggcgtcaccgccctgcagatggacatcaagatcaacggcatcaccgaagagatcatggag
atcgctctggagcaggcgctggaagcgcgtctgaacatcctgggtcagatgaaccaggtg
atctccgagtcccgtgccgagctgtccgaaaacgccccgaccatgctggcgatgaagatc
gatcaggacaagatccgcgacgtgatcggcaagggtggcgccaccatccgtggtatctgc
gaagagaccaaggcctcgatcgacatcgaagacgacggcaccatcaagatctacggcgag
acccgcgaagccgctgaagcagccaagcagcgcgtccttggcatcaccgccgaggccgag
atcggcaagatctacgtcggtaaggtggagcgcatcgtcgacttcggcgccttcgtcaac
atcctgcccggcaaggacggcctggtgcacatctcgcagctgagcgatcagcgcatcgag
aaggtcactgacgtgctgaaagaaggtcaggaagtgaaggtgctggtgctggacgtggac
aaccgcggtcgcatcaagctgtcgatcaaggacgtggcggcggcggaagcctccggcgtc
taa
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