Pseudomonas benzopyrenica: V6W80_02870
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Entry
V6W80_02870 CDS
T10550
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6W80_02870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pben03019
]
V6W80_02870
Enzymes [BR:
pben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6W80_02870
Messenger RNA biogenesis [BR:
pben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6W80_02870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WWM67242
UniProt:
A0ABZ2FQY7
LinkDB
All DBs
Position
complement(604239..606122)
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AA seq
627 aa
AA seq
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MSFISLGLSEALARAVEDAGYTNPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPNGHPDGHHYVAKQPRVLVLTPTRELAAQVHDSFKVYARDLPMRSACVFGGVGLKP
QVTALAKGVDVLVACPGRLLDLAGQQSVDLSAVEVLVLDEADRMLDMGFIHDVKKVLARL
PAQRQNLLFSATFSKDITDLAGKLLQDPERIEVTPPNTTVERIEQRLFRIPANQKRALLA
HLITLGAWEQVLVFTRTKHGANRLAEYLNKHGLPAAPIHGNKSQNARTKALADFKSNEVR
VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL
KAIERLTKQSIPDGDMQGFDPQSVPPEQPEVRAPREPRGKPQQNRQKKADKPARSEGKGQ
NQGQGQNQGKAASGEQSGAQPQGERKGRSRNRRDRRDRDDAGQANAQPGQAVVQQPRNRD
PEEFLDDAYDNFGNSVDYVSPYQGKGRKGPRSGNGGNAPRAATTGGQGQLRQGQGQGAAR
GPRSQQQQQPGKRRGQNGQPRAARPYEAAPSEPRAYATEERASNKPQPKIVHKPSRADRL
PTLEQLEEMPSRPRSEKPALLTRNRDA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcatttccctcggtctctccgaggcccttgcccgcgccgtggaagacgctggc
tacacgaatcccacgcctgttcagcaacgcgccattccggccgtcctgcagggtcgcgat
ctgatggtggctgcccagaccggcaccggcaagaccggtggcttcgcgctgccggtgctc
gagcgcctgtttcccaacggtcatcccgacggtcaccactatgtggccaagcagccccgg
gtactggtgctcaccccgacccgcgaactggcggctcaggtgcacgacagtttcaaggtc
tatgcccgcgacctgcccatgcgcagcgcctgcgtcttcggtggcgtcggcctcaagccg
caggtcaccgccctggccaagggtgtcgatgtcctcgtcgcctgcccgggtcggctgctg
gacctcgccggccagcagagcgtcgatctgtccgccgtcgaggtgttggtgctggacgaa
gccgaccgcatgctcgacatgggtttcatccatgacgtgaagaaggtcctggcccgcctg
ccggcgcagcgccagaatctgctgttctcggccaccttctccaaggacatcaccgacctc
gccggcaagttgctgcaggatcccgagcggatcgaggtcaccccgccgaacaccaccgtc
gagcgcatcgaacagcggctgttccgcattccggccaaccagaagcgcgccctgctcgcc
cacctgatcaccctgggtgcctgggaacaggtgctggtgttcactcgcaccaagcacggc
gccaaccgcctggccgagtacctgaacaagcatggcctgccggccgcgccgatccatggc
aacaagagccagaatgcccgcaccaaggccctggccgacttcaagagcaacgaggttcgc
gtcctcgtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccacgtg
gtcaacttcgagctgcccaatgtcgaggaagactatgtgcaccgcatcggccgtaccggc
cgggccggtcgcagtggcgaagccatctcgctggtggcgccggacgaagaaaagctactc
aaggccatcgagcgcctgaccaagcagagcattccggatggcgacatgcagggcttcgat
ccgcagtccgtgccgcccgagcagccggaagtgcgcgccccgcgcgaaccccgtggcaag
ccgcagcagaatcgccagaagaaggccgacaagccggcgcgcagcgaaggcaaaggccag
aatcagggccagggccagaaccagggcaaggcggccagtggcgagcagtccggcgcccag
ccccagggcgagcgcaagggtcgttcccgcaatcgtcgcgaccgccgcgatcgcgatgac
gccggtcaggccaatgcgcaacccggccaggccgttgtgcagcagccgcgcaatcgtgat
ccggaagaatttctggatgacgcctacgacaacttcggcaacagcgtcgactacgtgagt
ccctaccagggcaagggccgcaagggtccgcgcagtggcaacggcggcaacgcgccgcgc
gccgccacgaccggcggccagggccagctccgtcagggtcaaggccagggcgctgcccgc
ggtccgcgcagccagcaacagcagcagcccggcaagcggcgtggtcagaacggccagccc
cgcgccgcccggccctatgaagccgcgcccagcgagccacgcgcctatgctacggaagag
cgggcgtcgaacaagccgcagccgaagatcgtgcacaagccgtcgcgtgccgatcgcctg
ccgaccctggagcagctggaagagatgccaagccggccgcgcagcgagaagcccgcgctg
ctgacccgcaaccgcgacgcctga
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