Pseudomonas benzopyrenica: V6W80_03560
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Entry
V6W80_03560 CDS
T10550
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben00260
Glycine, serine and threonine metabolism
pben00460
Cyanoamino acid metabolism
pben00630
Glyoxylate and dicarboxylate metabolism
pben00670
One carbon pool by folate
pben00680
Methane metabolism
pben01100
Metabolic pathways
pben01110
Biosynthesis of secondary metabolites
pben01120
Microbial metabolism in diverse environments
pben01200
Carbon metabolism
pben01230
Biosynthesis of amino acids
pben01240
Biosynthesis of cofactors
pben04981
Folate transport and metabolism
Module
pben_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
V6W80_03560 (glyA)
09102 Energy metabolism
00680 Methane metabolism
V6W80_03560 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
V6W80_03560 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
V6W80_03560 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
V6W80_03560 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
V6W80_03560 (glyA)
Enzymes [BR:
pben01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
V6W80_03560 (glyA)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
Aminotran_5
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
WWM67377
LinkDB
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Position
complement(758685..759938)
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AA seq
417 aa
AA seq
DB search
MFSRETTLARFDADLYAAMQQEAQRQEDHIELIASENYTSPAVMEAQGSVLTNKYAEGYP
HKRYYGGCEYVDVVEQLAIDRAKQLFGADYANVQPHSGSQANSAVYLALIEAGDTILGMS
LAHGGHLTHGATVSSSGKLYNAVQYGIDEQGLIDYAEVERLAQEHKPKVIVAGYSAYSQV
LDFARFRAIADAVGAYLFVDMAHFAGLVAAGVYPNPVPFADVVTSTTHKTLRGPRGGLIL
AKANEAIEKKLNSAVFPGAQGGPLMHVIAGKAVCFKEALQPEFKTYQQQVIKNAQAMASV
FIERGFDVVSGGTDNHLFLLSLIKQEITGKDADAALGRAFITVNKNSVPNDPRSPFVTSG
LRIGTPAVTTRGFQEAECRELAGWICDILGNMGDESVIDAVREKVKAVCARLPVYGK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagccgtgaaaccaccctcgcccgcttcgacgccgacctgtatgccgccatgcag
caggaagcccagcgtcaggaagatcacatcgagctgatcgcttcggaaaactacaccagc
ccggcggtcatggaagcccagggtagcgtgctgaccaacaagtacgccgaaggctatccc
cacaagcgctactatggcggttgcgaatacgtcgacgtggtcgagcaactggccatcgac
cgcgccaagcagctgttcggcgccgactacgccaacgtccagccgcactccggctcccag
gccaactcggcggtgtacctggcgctgatcgaagccggcgacaccattctcggcatgagc
ctggctcacggcggccacctgacccacggcgccaccgtgtcctcgtcaggcaagctgtac
aacgccgtccagtacggtatcgatgagcaaggcctgatcgactacgccgaggtcgagcgc
ctggcccaggagcacaaacccaaggtcatcgtcgccggctactctgcctactcccaggtg
ctggatttcgcccgcttccgcgccatcgccgatgccgtgggtgcctacctgttcgtcgac
atggcccacttcgccggcctggtcgccgccggtgtctaccccaatccggtgcccttcgcc
gacgtggttaccagcaccacccacaagaccctgcgcggcccgcgcggcggcctgatcctg
gccaaggccaacgaagccatcgagaagaagctcaactcggcggtcttccccggtgcccag
ggcggtccgctgatgcatgtcatcgccggcaaggcggtgtgcttcaaggaggccctgcag
cccgagttcaagacctatcagcagcaggtgatcaagaacgcccaggccatggccagcgtg
ttcatcgagcgcggcttcgacgtggtctccggcggcaccgacaaccacctgttcctgctc
agcctgatcaagcaggaaattaccggcaaggatgcggacgctgccctgggtcgcgccttc
atcaccgtgaacaagaactcggtgccgaacgatccgcgctcgcccttcgtcacctccggt
ctgcgcatcggcaccccggccgtcaccacccgtggcttccaggaagccgagtgccgcgag
ctggccggctggatctgcgacatcctcggcaacatgggcgacgagtcggtgatcgatgcc
gtgcgcgagaaggtcaaggccgtctgcgcccgcctgccggtgtacggcaagtaa
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