Pseudomonas benzopyrenica: V6W80_05605
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Entry
V6W80_05605 CDS
T10550
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
V6W80_05605
09124 Replication and repair
03420 Nucleotide excision repair
V6W80_05605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pben03021
]
V6W80_05605
03036 Chromosome and associated proteins [BR:
pben03036
]
V6W80_05605
03400 DNA repair and recombination proteins [BR:
pben03400
]
V6W80_05605
Enzymes [BR:
pben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
V6W80_05605
Transcription machinery [BR:
pben03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
V6W80_05605
Chromosome and associated proteins [BR:
pben03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
V6W80_05605
DNA repair and recombination proteins [BR:
pben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
V6W80_05605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-ProteinID:
WWM67756
UniProt:
A0ABZ2FW47
LinkDB
All DBs
Position
1215842..1218115
Genome browser
AA seq
757 aa
AA seq
DB search
MSYRIAVRALCEFTAKAGDLDLRFTPSPTALEGIEGHQRVAARRGPGYEREVSLQGDFED
LQVRGRADGFDAAANRLEEIKTHRGSLERQPGNHRHLHWAQAKVYGHLLCQARELPGLTL
ALVYFDIGSGAETVFTEAWTAADLAEHFALQCSRFLAWARQELTHRAKRDEALATLAFPH
ADFRHGQRPLAEAVYKAASVGCCLLAQAPTGIGKTVGTLFPLLKAMPRQNLDRLFFLAAK
TPGRALALHGLESLAAPVRVLELVARDKACEHPELACHGESCPLARGFYDRLPAARADAL
AEPMQLTRARVRETALAHEVCPYYLAQELARWSDVVVGDYNYYFDGSAMLHALAQTQEWR
VGVLVDEAHNLLDRARGMYSASLDQRRLAAGKSVAPPAIAKGLQALNREWNRLHKEQQVD
YQVQAELPAAFLTALQRVVGLLTEHFGEPGQPPAPELQTLFFDLLQFMRLGETFGDHSLF
DVTLLKGRGKAQSQLNLRNLVPAPFVGPRLAAAHSCTLFSATLIPQHFHRDLLGVPVGSA
WVDVASPFAAEQLEVRLVRLSTRYADRAASRAPIAALIASRYRQRPGNYLAFFSSFDYLD
QVAEALAELAPDVPQWRQSRGMDEAARQAFLDRFQADGRGIGFAVLGGSFGEGIDLPGDR
LIGAFVATLGLPQLNPVNEQLRQRLQRRFGDGYRYAYLYPGLQKVIQAAGRVIRTVQDRG
CLYLIDDRFTQPEVRALLPSWWQVEEGAVPTGEPAPA
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcgcatcgccgttcgcgccctctgcgaatttaccgccaaggccggcgacctg
gacctcaggttcaccccgtcgcccaccgccctggaaggtatcgaaggccaccagcgggtg
gcggcgcggcgcggtcccggctatgagcgcgaggtcagcctgcagggcgacttcgaggac
ctgcaggtgcgtggtcgcgcggacggtttcgatgccgccgccaatcgcctggaggagatc
aagacccacaggggtagcctggaacgccagccgggcaaccatcgccacctgcactgggcc
caggccaaggtctatggccatctgctctgccaggcccgcgagctgccggggctgaccctg
gcgctggtctatttcgacatcggcagtggcgcggagaccgtcttcaccgaagcctggacg
gcggccgatctggccgagcacttcgccttgcagtgctcgcgctttctcgcctgggcgcgc
caggagctgacccatcgtgccaagcgggatgaggcgttggcgaccctggcctttccgcat
gccgactttcgccatggccagcggccgctggcggaagccgtctacaaggccgccagcgtc
ggctgttgcctgctggcccaagcgcccaccggcatcggcaagacggtgggcaccctgttc
ccgctgctcaaggccatgccgcggcagaacctggaccggctgttctttctcgccgccaag
acccccggccgcgccctggccctgcatgggctggagtccctggccgcaccggtgcgggtg
ctggaactggtggcgcgggacaaggcttgcgagcacccggaactggcctgccatggcgag
tcctgtccgctggcacgaggcttctacgaccgactgccggccgcccgcgccgacgccctg
gccgaacccatgcagttgacccgggcgcgggtgcgggagaccgccctggcccatgaggtc
tgcccctactacctggcccaggaactggcgcgctggagcgacgtggtggtgggcgactac
aactactatttcgacggcagcgccatgctccatgccctggcccagacccaggagtggcga
gtcggcgtgctggtggacgaagcccacaacctgctcgaccgcgcccgcggcatgtacagc
gccagcctcgaccagcgccgcctggccgccggcaagagcgtggcaccaccggcaatcgcc
aagggcctgcaggcgctcaatcgcgaatggaaccgcctgcacaaggagcagcaggtcgac
taccaggtgcaggcggaattgcccgccgccttcctcaccgccctgcaacgggtggtgggt
ctgctcaccgagcatttcggcgaacccggccagcccccggcgccggagttgcagacgctg
ttcttcgacctgttgcaattcatgcgcctgggcgagacctttggcgatcactcgctgttc
gatgtcaccctgctcaagggccgcggcaaggcccagtcgcaactcaacctgcgcaacctg
gtgccggcacccttcgtcggtccgcggctggcggcggcccacagctgcaccctgttctcg
gccaccctgatcccccagcacttccaccgcgacctgctcggggtgccggtcggcagcgcc
tgggtggacgtggcctcgcccttcgccgccgagcagctggaggtgcgcctggtacggctt
tccacccgctacgccgatcgcgccgcctcccgcgcgcccatcgccgccctgatcgccagc
cgttatcgccagcgaccgggcaactacctggccttcttcagcagcttcgactacctcgac
caggtcgccgaggccctcgccgaactggcgcccgacgtgccccagtggcggcagtcccgc
ggcatggacgaagctgcccgccaagcctttctcgaccgcttccaggccgatggccgtggt
atcggtttcgccgtgctgggtggcagtttcggcgagggcatcgacctgcccggcgaccgc
ttgatcggcgccttcgtcgccacccttggcctgccccagctcaatccggtcaacgaacag
ctgcgccagcgcctgcaacggcgctttggcgatggctatcgctacgcctacctctatccg
ggcctgcaaaaagtcatccaggccgccggccgggtgatccgcaccgtgcaggaccgcggc
tgcctctatctcatcgacgatagattcacccaacccgaggtcagagcgctgctgccgagt
tggtggcaagtggaggagggggcggtgcccacgggcgaacctgcgcccgcttga
DBGET
integrated database retrieval system
