Pseudomonas benzopyrenica: V6W80_06255
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Entry
V6W80_06255 CDS
T10550
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03030
DNA replication
pben03430
Mismatch repair
pben03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6W80_06255 (dnaE)
03430 Mismatch repair
V6W80_06255 (dnaE)
03440 Homologous recombination
V6W80_06255 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pben03032
]
V6W80_06255 (dnaE)
03400 DNA repair and recombination proteins [BR:
pben03400
]
V6W80_06255 (dnaE)
Enzymes [BR:
pben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6W80_06255 (dnaE)
DNA replication proteins [BR:
pben03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6W80_06255 (dnaE)
DNA repair and recombination proteins [BR:
pben03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6W80_06255 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
T2SSK
Motif
Other DBs
NCBI-ProteinID:
WWM67882
UniProt:
A0ABZ2FVI1
LinkDB
All DBs
Position
1360299..1363820
Genome browser
AA seq
1173 aa
AA seq
DB search
MSASFVHLRLHTEYSLVDGIVRVKGLVKAAEAAGMPAVAVTDQGNLCSLVKFYKAAMGAG
IKPIAGADIWLAGREGDAPLTRMTLLVMNAKGYRNLTELLSRGFREGQQDGQIVIQRDWV
KEANEGLIALSGSKEGEIGLALLEGDLALADQLFEEWQQVFQERFYLEVQRTERAGDEEH
LHAAVALADRCGGALVATNDVRFLKAEDFEAHETRVCIGEGRPLDDPRRERKYSDQQYLK
SAAEMAELFSDLPEALENTVEIAKRCNIEIQLGKYFLPNFPIPNGMTINDYLRHVSFEGL
EERLAVLWPRETTPNYEEKRQEYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIEYV
ADLYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLQKAYEQE
EPLRDFLATDEDAKEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEDGNGLV
TQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINRTEVEEGREPLNIDFIPLDDKPTYA
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMGGYTLGQADMLRRAMGKKKPE
EMAKQRGGFIEGCANNGIDGELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVILIEECRHMKLRIDTPDVNISEFKFTVNEGGRIVYGLGAI
KGVGEGPVEAIVEARAEGPFKDLFDFCARVDLKRINKRTLEALIRSGALDRLGPHYHDEL
KAYQATIDQNRAVLLAAMEEAIASAEQTARSHNSGHVDLFGGVFAEPEADVYANHRRARE
LNLKERLRGEKETLGLYLTGHPIEEYEGEVRRLARQRIVDLKPSRETQTVAGLIVNLRVM
KNKRGDKMGFVTLDDRSGRIEASLFAEAFNAAQALLQTDALVIVEGEVSQDDFSGGLRLR
AKRVLGLEEARTALAESLRIAVRSEALAGDRLRWLGELCGRHRGACPVTIDYQGPTARAL
LQFGENYRIDPADGLIQTLRDQFGRENVFLNYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcatccttcgtccatctgcgtctccacacggaatactccctggtcgatgggatc
gtgcgggtgaaggggctggtcaaggctgccgaagccgccggaatgccggccgtggcggtg
accgaccaaggcaacctctgttcgctggtcaagttctacaaggccgccatgggcgccggg
atcaagcccatcgccggcgccgatatctggctggccggtcgcgaaggcgacgcgcccctg
acccgcatgaccctgctggtcatgaacgccaagggctatcgcaacctgaccgagctgctg
tcccggggtttccgggaaggtcagcaggacggccagatcgtcatccagcgcgactgggtg
aaggaagccaatgaaggtctgatcgccctgtccggttccaaggagggcgagatcggcctg
gcgctgctcgaaggcgatctggccctggccgatcagttgttcgaggaatggcagcaggtc
ttccaggagcgcttctatctggaggtgcagcgcaccgaaagagccggtgacgaagaacat
ctgcatgccgccgtggccttggccgatcgctgcggtggcgcgctggtggcgaccaacgac
gtgcgctttctcaaggccgaggacttcgaggcccacgagacccgcgtctgcatcggcgag
ggccgtccgctggacgatccccggcgcgagcgcaagtacagcgaccagcagtacctgaag
tcggcggccgagatggccgagctgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgaaatccagttgggcaaatacttcctgcccaacttc
ccgattcccaacgggatgaccatcaacgactacctgcgccatgtgtccttcgagggcctg
gaggagcgcctggccgtgctctggccgcgcgagaccacgccgaactacgaggaaaagcgc
caggagtacgtcgaccggcttaacttcgagctcgacatcatcatccagatgggcttcccc
ggttacttcctcatcgtgatggacttcatcaagtgggcgaagaacaacggcgtaccggtc
ggtcccggccggggctcgggtgccggctccctggtcgcctatgtgctcaagatcaccgac
ctggatccgctggcctacgacctgctgttcgagcgcttcctgaaccccgagcggatctcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgaccgggtgatcgaatacgtg
gccgacctctatggtcgcgaggcggtgagccagatcatcaccttcggcaccatggccgcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctatggcctggccgaccgt
ctgtcgaagatgatccccttcgaagtgggcatgaccctgcagaaggcctatgagcaggag
gagccgctgcgcgatttcctggcgaccgacgaggacgccaaggaaatctgggacatggcc
ttgaagctggaaggcatcacccgcggcaccggcaagcacgccgggggcgtggtgatcgcg
ccgaccaagctgaccgacttctcgcccatcgcctgcgacgaagatggcaacggcctggtg
acccagttcgacaaggacgacgtcgagcaggccggtctggtcaagttcgacttccttggt
ctgcgcaccctgaccatcatcaagtgggcgctggagaccatcaaccgcacggaagtggag
gaggggcgcgagccgctcaacatcgacttcatcccgctggacgacaagccgacctacgcc
ctgctgcagaaggccgagaccaccgccgtcttccagctggaatcccgcggcatgaaggag
ctgatcaagaagctcaagccggactgcctggaagacctcatcgccctggtggcgctgttc
cgcccgggtccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctatccgcatccggactaccagtacgaaggcctgcagccggtgctggcg
cccacctatggcatcatcctctaccaggaacaggtgatgcagatcgcccaggtcatgggc
ggctacaccctgggtcaggcggacatgctgcgccgcgccatgggcaagaagaagcccgag
gagatggccaagcagcgcggcggcttcatcgagggctgcgccaataacggcattgatggc
gagctggcgggcaacatcttcgacctggtggagaaattcgccggttacggcttcaacaag
tcgcactcggccgcctacggcctggtttcctaccagaccgcctggttgaagactcactat
ccggcgcccttcatggccgcggtgctgtcggcggatatgcataacaccgacaaggtggtg
atcctcatcgaggaatgccgccacatgaaactgcgcatcgacacgccggacgtgaacatc
tccgagttcaagttcaccgtgaacgagggcgggcgcatcgtctatggcctgggcgccatc
aagggcgtgggcgagggcccggtggaggccatcgtcgaggcgcgtgccgaggggcctttc
aaggatctcttcgacttctgcgcgcgggtggatctcaagcgcatcaacaaacgcaccctg
gaagccctgattcgctccggtgccctggaccgcctggggccgcattaccacgacgaactc
aaggcctatcaggcgaccatcgaccagaatcgcgccgtgctgctggcggccatggaagag
gccatcgcctcggccgagcagaccgcgcgcagtcacaacagtggtcacgtggatctcttc
ggtggcgtcttcgccgaacccgaggccgacgtctatgccaaccaccgtcgcgcccgggag
ctcaatctcaaggagcgcctgcgcggggaaaaggagaccctggggctgtacctgaccggt
caccccatcgaggaatacgaaggcgaggtgcgccggctggcgcgccagcgcatcgtcgac
ctcaagccgtcgcgggaaacccagaccgtggccgggttgatcgtcaacctgcgggtgatg
aagaacaagcgcggcgacaagatgggcttcgtcaccctggacgatcgctccgggcgcatc
gaggcctcgctgttcgccgaagccttcaacgccgcccaggcgctgctgcagaccgatgcc
ctggtgatcgtcgagggcgaggtcagccaggacgatttctccggtggtctgcgcctgcgc
gccaagcgggtgctgggcctggaagaggcccgtaccgccctggcggagagcctcaggatc
gccgtgcgcagcgaggcgctggccggtgatcggctgcgctggctgggcgagttgtgcggt
cgccatcgcggcgcctgcccggtcaccatcgactaccaggggcccaccgcgcgggcgttg
ctgcagttcggcgagaactaccggatcgacccggccgatggcctgattcaaaccctgcgt
gaccagttcggcagggagaacgtctttctcaactatcgttaa
DBGET
integrated database retrieval system
