Pseudomonas benzopyrenica: V6W80_07885
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Entry
V6W80_07885 CDS
T10550
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
pben Pseudomonas benzopyrenica
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pben03032
]
V6W80_07885
03036 Chromosome and associated proteins [BR:
pben03036
]
V6W80_07885
03400 DNA repair and recombination proteins [BR:
pben03400
]
V6W80_07885
DNA replication proteins [BR:
pben03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
V6W80_07885
Chromosome and associated proteins [BR:
pben03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
V6W80_07885
DNA repair and recombination proteins [BR:
pben03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
V6W80_07885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
HU-DNA_bdg
TFIIB
DUF2267
Motif
Other DBs
NCBI-ProteinID:
WWM68190
LinkDB
All DBs
Position
complement(1709453..1709725)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKAELIDAIAASADLPKATAAKALDAFTTAVTDALKQGDSVSLVGFGTFAVKERAAREG
RNPQTGATIKIAAAKLPGFKPGKGLKDAVS
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagctgagctgatcgacgccattgccgcgtctgccgacctgcccaaggccacc
gctgccaaagccctggacgccttcaccactgcggtgaccgacgccctgaagcaaggcgac
agcgtcagcctggtcggtttcggaactttcgcagtaaaagagcgcgctgctcgcgaaggc
cgcaacccgcagaccggtgccaccatcaagatcgccgctgccaagctgcccggcttcaag
cccggcaaaggcctgaaagacgccgtcagctaa
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