Pseudomonas benzopyrenica: V6W80_08695
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Entry
V6W80_08695 CDS
T10550
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pben Pseudomonas benzopyrenica
Brite
Enzymes [BR:
pben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
V6W80_08695 (hrpA)
Messenger RNA biogenesis [BR:
pben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V6W80_08695 (hrpA)
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SSDB
Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
WWM68338
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All DBs
Position
1868985..1873010
Genome browser
AA seq
1341 aa
AA seq
DB search
MTDTPAVARLAANLDQAFNADRHRLRRQLQALQKQPDPVREAQWLERFQASCAKVEARRA
SVPRIRYDDALPIAAKREEIKRAIEGHQVVVIAGETGSGKTTQLPKICLELGRGVQGLIG
HTQPRRLAARSVGARVAEELGSPLGELVGYQVRFEDQSTDATLIKLMTDGILLAETQHDR
FLERYDTLIVDEAHERSLNIDFLLGFLKTLLPRRPDLKLIITSATIDLERFSQHFDGAPI
VEVSGRTYPVDTWYRPLSAEVDEDGERLVDDLSVDQGILQALDEIEAHERSVGQRPGDVL
VFLPGEREIRDCAEVLRKAQLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAETS
LTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSE
EDFLGRPTFTDPEILRTNLAAVILQMLHLRLGRIEDFPFIEPPDGKAIKDGFTLLQELSA
VDVEGRLLPLGRQLARLPVDPRLGRMLLEATEQGSLAEVLIVTSALSVQDPRERPADRQT
QADQAHAQWKDPDSDFAALVNLWHGFEEQRQALGSNALRSWCRKHFLNYLRLREWRDAHR
QLTLLCRELGLQARKTESPAPAPAEVGNRPAPTTDKHVNAKAQQQAEANEAAVRARGYAA
LHKAILAGLLSQIGQRSEDGDYLGARQRRFWIHPSSVIGRKKPTWIMAAELVETTKLFAR
MVAKIEPDWIEPVAGHLVKKTHLEPHWEKKRGQVVAYEQVTLYGLIVVGRRPVHFGPIDP
PAARELFIREGLVRGEINSRAKCLAANRALLERLDELEAKARRRDILADEETLFDYYAAR
LPADVYQTATFDSWYRRESAKQPDLLLMREEDVLAREASEVTAAQYPDTLRLGELILPLS
YEFDPTHPRDGVTLRVPAPLLPQLPPQRLDWLVPGLLYDRCVALVRNLPKALRKNFVPVP
DFVRAALDKIPFGEGSLHEALGRELQRMTGARIPDEAWPEAEAGLDPHLRMNLEVVDAQG
KPLGEGRDLAEVTARFAQESQAALALPTQKRQEQRPVEAKAFAEVAAKTQQQVAGLSMTV
YPALVDEQGTVREGRFATQAEARYQHRRALQRLLLQQLTEQAKFLRGKLPGLTELGLLHR
ELGRPEALVEDILLASLDAAILADEAELPRDGAGLASLAERRKAGWTEQAERIARLTLEI
LKLWHGLQKKFKGRIDLAQAVALNDIKAQLASLVYPGFVRDTPLEWLKEYPRYLKAIEQR
FDKLGGQVQRDRVWSGELAGLWEQYRARAAKHGQEGKRDANLELYRWMLEEYRVSLWAQQ
LGTRMPVSDKRLNKQWSQVEA
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacccccgccgttgcccgtcttgccgccaacctggatcaggccttcaacgcc
gatcgccatcgcctgagacgccagctccaggccttgcagaaacagcccgatccagtccgc
gaggcccagtggctggaacgctttcaggcctcctgcgccaaggtcgaggcgcggcgggcc
agcgtgccgcgtatccgttacgacgatgccctgccgatcgcggccaagcgcgaggagatc
aagcgcgccatcgaaggccatcaggtggtggtgatcgccggcgagaccggttcgggcaag
accacccagttgcccaagatctgtctggaattgggcaggggtgtacaagggctgatcggc
cacacccagccccgccggctggcggcacgcagcgtgggtgcgcgggtagcggaggagctg
ggttcgccgctgggcgagctggtgggctatcaggtgcgcttcgaagaccagagcaccgac
gccaccctgatcaagctgatgaccgacggcatcctgctggccgagacccagcacgaccgc
tttctcgaacgctatgacacccttatcgtcgacgaggcccacgagcgcagtctcaacatc
gatttcctgctgggctttctcaagaccctgctgccgcgccgacccgatctcaagctgatc
atcacctcggccaccatcgacctggagcgcttctcccagcatttcgacggcgcgcccatc
gtcgaggtgtccgggcggacctatccggtggatacctggtaccgccccctcagcgccgag
gtggacgaagacggcgagcggctggtggacgacctctccgtggaccagggcatcctccag
gccctggacgagatcgaggcccacgagcgcagcgttggccagcgcccgggcgatgtgctg
gtgtttctgcccggcgagcgcgagatccgcgattgcgccgaggtgctgcgcaaggcccag
ctgaaattcaccgaggtcttgccgctctatgcgcggctgaccccggccgagcagcagaag
atcttccagccgcgtcccggacgcaagatcgtgctggccaccaacgtcgccgagacctcg
ctgaccgtgccgggcattcgctacgtgatcgacagcggcaccgcgcgcatcagtcgctac
agctatagagccaaggtccagcggttgcctatcgaagccgtctcccaggccagcgccaac
cagcgcaagggccgctgcggacgggtcgagccgggcatctgcattcgcctctacagcgaa
gaagacttcctgggacggccgacctttaccgatccggagatcctgcgcactaacctggcg
gcggtgatcctgcagatgctgcatctgcgcctgggtcgcatcgaagacttccccttcatc
gagccgccggatggcaaggccatcaaggacggcttcaccctgttgcaggagctctcggcg
gtcgatgtcgaaggccgcctgctacccctgggccggcagctggcgcgccttcccgtcgat
ccgcgcctgggccgcatgctgctggaggcgacggagcagggcagtctcgccgaggtgctg
atcgtcaccagtgccctgtcggtgcaggacccgcgcgagcgcccggccgatcgccagacc
caggccgatcaagcccacgcccagtggaaggacccggattcggattttgccgccctggtc
aatctctggcacggcttcgaggagcagcgccaggcgctaggttccaatgccctgcgcagc
tggtgccgcaagcacttcctcaactacctgcggctgcgcgaatggcgcgatgcccatcgc
cagctgaccctgctctgccgcgagctggggctccaggcgcgcaagaccgaaagtccggcg
ccggcacccgcggaggtcggcaacagacctgcgcccaccaccgacaagcacgtcaacgcc
aaggctcagcaacaggccgaggccaacgaggcggcggtgcgtgcccgcggctatgcggcg
ctgcacaaggccattctcgccggtctgctcagccagatcggccagaggagcgaggatggc
gactacctgggcgcgcgtcagcgacgcttctggatccatcccagcagcgtcatcggccgc
aagaagcccacctggatcatggccgcggagctggtggagaccaccaaactgttcgcccgc
atggtggccaagatcgaaccggactggatcgagccggttgcgggccacctggtcaagaag
acccatcttgagccgcactgggagaagaagcgcggccaggtggtggcctatgaacaggtc
accctctatggcctgatcgtggtcggccgccgcccggtgcacttcggccccatcgatccg
cctgctgcccgcgagctgttcatccgcgaaggcctggtgcgtggcgagatcaacagccgc
gccaagtgcctggcggccaaccgcgccctgctggaacgcctggacgagctggaggccaag
gcgcggcgccgtgacatcctcgccgacgaagagacgctgttcgactactatgccgcgcgc
ctgccggcggacgtctaccagaccgccaccttcgacagctggtatcgccgcgagagcgcc
aagcagcccgacctcttgctgatgcgcgaagaggacgtcctcgcccgcgaagccagcgag
gtgaccgccgcccagtacccggacaccctgcgcctgggcgaactgatcctgccgctgtcc
tacgaattcgacccgacccatccccgcgatggcgtcaccctgcgggtgcccgcgccgcta
ttgccacagttgccaccccagcgcctcgactggctggtgccggggttgctctatgatcgc
tgcgtggccctggtgcgcaacctgcccaaggccttgcgcaagaacttcgtcccggttccg
gatttcgttcgcgccgccctggacaagattcccttcggcgagggttcgctgcacgaagcc
ctggggcgtgaactgcagcgcatgaccggcgcgcgcattcccgacgaagcctggccggaa
gccgaagccggcctggatccgcatctgcgcatgaatctcgaagtcgtcgatgctcagggc
aagccgctgggggaaggtcgcgatctggccgaggtgacggcgcgcttcgcccaggaaagc
caggcggccctggcgctaccgacacagaagcgtcaggagcagcgcccggtggaggccaag
gccttcgccgaggtggcggccaagacccagcagcaggtggcggggctgtcgatgacggtc
tatccggcactggtggacgagcagggcacggtgcgcgaaggccgcttcgccacccaggcc
gaggcccgctaccagcaccggcgggcgctgcagcgactgctgctgcagcaactgacggag
caggccaagttcctgcgcggcaagttgcccggcctcaccgagctgggcctgctgcaccgc
gaactgggtcgtccggaagccctggtggaagacatcctgttggccagcctggacgccgcc
atcctcgccgacgaagccgagctgccccgcgatggcgccggcctggcttcattggccgag
cgacgcaaggcgggctggaccgaacaggccgaacggatcgcacgcctgaccctggagatc
ctcaagctctggcatggcctgcagaagaaattcaagggccgcatcgacctggcccaggcg
gtggccctgaacgacatcaaggcgcaattggccagcctggtctatcccggcttcgtccgg
gatacgccgctggagtggctcaaggaatacccgcgctacctcaaggccatcgagcagcgt
ttcgacaagctcggcggccaggtgcagcgcgatcgcgtctggagcggcgaactggccgga
ctctgggagcagtatcgcgcccgcgccgccaagcatggtcaggagggcaagcgcgacgcc
aacctggagctctatcgctggatgctggaagagtaccgggtgtcgctctgggcccagcaa
ctggggacccggatgccggtgtcggacaagcgcttgaacaagcagtggagccaggtggaa
gcctag
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