Pseudomonas benzopyrenica: V6W80_12150
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Entry
V6W80_12150 CDS
T10550
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6W80_12150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pben03019
]
V6W80_12150
03009 Ribosome biogenesis [BR:
pben03009
]
V6W80_12150
Enzymes [BR:
pben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6W80_12150
Messenger RNA biogenesis [BR:
pben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6W80_12150
Ribosome biogenesis [BR:
pben03009
]
Prokaryotic type
rRNA helicases
V6W80_12150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
TrkA_N
Cas3-like_C_2
TDP-43_C
Motif
Other DBs
NCBI-ProteinID:
WWM64495
UniProt:
A0ABZ2FIH6
LinkDB
All DBs
Position
complement(2559681..2561375)
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AA seq
564 aa
AA seq
DB search
MTQDISNFAALNLNPAILAAIKAVGYEEPSPIQSQSIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSQLDPSRREPQILVLVPTRELALQVATACETYSTEMPGVKVVALYGGAPMGPQLK
SLRMGAQVLVATPGRLCDHLRRDDNLLATVQHLVLDEADEMLKLGFMDDLEFIFEAMPES
RQTVLFSATLPPSIRAIAERHLKEPQHVRIAAKTQTVARIEQAHLMVHADQKPASVLRLL
EVENFDALIAFVRTKQATLDLAELLERQGYRVSALNGDMPQAQREKTIESLKDGSLDIVV
ATDVAARGLDVARITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQRVGEIRLPDAEAVLEARISRLADGVGSLLADADTTHGALRQELCERLQCDPSTL
AAALLAKLTSGRALDIESVRREQPLTPGAGRGERPRGERPERGDRPERGERPDRGERRPM
QPLPEGRVRCRTALGARDGVAAKNLLGAIINEGGMDREAIGRIQIRDSFSLVELPEEGLE
RLLTKLKDTRVAGKALRLRRYRED
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggacatcagcaatttcgctgcgctcaatctcaatcccgccatcctcgccgcc
atcaaggccgtcggctacgaagagccgtcgcccatccagtcgcagtccatcccggtgatc
ctcgccggccacgacatgatcggccaggcgcagaccggtaccggcaagaccgcagccttc
gctctgccgctgctctcgcagctcgacccgtcccgtcgcgaaccccagattctggtgctg
gttcccacccgtgaactggccctgcaggtggctaccgcctgcgaaacctattccaccgag
atgcccggcgtgaaggtcgtggccctctacggcggcgcgcccatgggcccgcagctgaag
tccctgcgcatgggtgcccaggtactggtcgccacccccggtcgtctgtgcgaccacctg
cgtcgcgacgacaacctgctggccaccgtccagcacctggtgctcgacgaagccgacgag
atgctcaagctgggcttcatggatgacctcgaattcatcttcgaagccatgccggaatcc
cgccagaccgtgctgttctcggcgaccctgccgccgtcgatccgcgccatcgccgagcgt
cacctcaaggagccgcaacacgtccgcatcgcggccaagacccagaccgtcgcccgcatc
gagcaggcgcacctgatggtccacgccgaccagaagccggcctcggtgctgcgcctgctg
gaagtggagaacttcgacgccctgatcgccttcgtgcgcaccaagcaggcgaccctggac
ctggccgagctgctggagcgccagggctatcgcgtcagcgccctgaatggcgacatgccc
caggcccagcgcgagaagaccatcgagtccctcaaggacggttcgctggacatcgtggtc
gccaccgacgtcgctgcccgtggtctggacgtggcgcgcatcacccacgtgctgaacgtg
gacatgccctacgatccggaatcctatgtgcaccggatcggtcgtaccggccgtgccggt
cgtgaaggtcgtgcgttgctgctggtcaccccgcgcgagcgccgcatgctgcaggtcatc
gagcgcgtcaccggtcagcgcgtcggcgaaatccgcctgcccgacgccgaagccgtgctg
gaagcccgtatctcccgcctggccgatggcgtgggttcgctgctggccgatgccgacacc
actcacggcgccctgcgtcaggaactgtgcgagcgtctgcagtgcgatccttcgaccctg
gcggcggccctgctggccaaactgaccagcggccgcgccctggatatcgagtcggtgcgt
cgcgagcagccgctgacccccggcgccggtcgtggcgaacgtccccgtggcgagcgtcct
gagcggggcgaccgccctgagcgcggcgagcgtccggatcgcggcgagcgtcgtccgatg
cagccgctgccggaaggccgcgtgcgttgccgcaccgccctgggcgcccgtgacggcgtt
gccgccaagaacctgctgggtgccatcatcaacgaaggcggcatggatcgcgaggccatc
ggccgcatccagatccgtgactccttcagcctggtggagctgcccgaggaaggcctggag
cgtctgctgaccaagctcaaggacacccgtgtagctggcaaggccctgcgcctgcgtcgc
tatcgcgaggattga
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