Pseudomonas benzopyrenica: V6W80_14435
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Entry
V6W80_14435 CDS
T10550
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pben Pseudomonas benzopyrenica
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pben03009
]
V6W80_14435 (rimO)
Enzymes [BR:
pben01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
V6W80_14435 (rimO)
Ribosome biogenesis [BR:
pben03009
]
Prokaryotic type
ribosomal protein modification factors
V6W80_14435 (rimO)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAM_2
Radical_SAM
UPF0004
TRAM
CLP1_P
YajR_YAM
GbpA_2
Motif
Other DBs
NCBI-ProteinID:
WWM69039
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All DBs
Position
3068844..3070169
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AA seq
441 aa
AA seq
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MQTSAPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDSAKAE
SLDAIGEAIAENGKVIVTGCMGVDEGNIRGVHPSVLAVTGPQQYEQVVSAVHEVVPPQLE
HNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGRLVSRPVGDVLSEAERL
VKAGVKELLVISQDTSAYGVDLKYKLDFWNGQPVKTRMLELCEALSGMGVWVRLHYVYPY
PNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKRWREICPELTIR
STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEAVPDEVKQERW
ERFMAHQQAISAARLQLKIGREIEVLIDEVDEQGAIGRSYADAPEIDGNVYVDSANPLKP
GDKVWVRVTDADEYDLWAEAL
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atccaaacgtccgcccccaaggtcggtttcgtcagcctcggctgtcccaaggccaccgtc
gactccgaacgcatccttacccagctgcgcatggaaggctacgagatcgtgccgacctat
gaagacgccgacgtggtggtggtcaacacctgcggtttcatcgacagcgccaaggccgag
tccctggacgccatcggcgaggccatcgccgagaacggcaaggtgatcgtcaccgggtgc
atgggcgtcgacgagggcaacatccgcggcgtgcaccccagcgtgctggcggtgaccggt
ccgcagcagtacgagcaggtggtcagcgccgtccacgaggtggtgccgccgcagttggag
cacaatccgctgatcgacctggtcccgccccagggcatcaagctgaccccgcgccactat
gcctatctgaagatttccgagggctgcaaccacagctgcagcttctgcatcatcccctcc
atgcgcggcaggctggtcagccgcccggtgggtgacgtgctgtccgaggccgagcggctg
gtcaaggcgggcgtgaaggagctgctggtgatctcccaggacaccagcgcctacggcgtc
gacctcaagtacaaactggacttctggaacggccaaccggtcaagacgcgcatgctggaa
ctctgcgaggcgctgtcgggcatgggggtctgggtgcgcctgcactatgtctacccctac
cccaacgtcgacgacgtcattccgctgatggccgccggcaagctgctgccctatctggac
atccccttccagcacgccagccccaaggtgctcaagtccatgaagcgcccggcgttcgag
gacaagaccctggcgcgcatcaagcgctggcgggagatctgcccggagctgaccatccgc
tccaccttcatcgtcggcttccccggcgagaccgaggaagacttccagtacctgctggac
tggctcaccgaagcccagttggatcgcgtcggctgcttccagtattcgccggtcgagggc
gcgccggccaacgagctgggtctggaagccgttccggacgaggtcaagcaggagcgttgg
gagcgtttcatggcgcaccaacaggccatctccgcggcgcgcctgcagctcaagatcggt
cgcgagatcgaggtgctgatcgacgaggtggacgagcaaggcgccattggccgctcctac
gccgatgccccggaaatcgacggcaacgtctatgtcgacagcgccaatcccctcaagcca
ggcgacaaggtctgggtgcgggtcaccgacgccgacgagtacgacctctgggcagaggcg
ctctga
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