Pseudomonas benzopyrenica: V6W80_14515
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Entry
V6W80_14515 CDS
T10550
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6W80_14515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pben03019
]
V6W80_14515
Enzymes [BR:
pben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6W80_14515
Messenger RNA biogenesis [BR:
pben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6W80_14515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WWM64942
UniProt:
A0ABZ2FLZ1
LinkDB
All DBs
Position
3085968..3087278
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AA seq
436 aa
AA seq
DB search
MTFADLGLIDPLLQALAALEHSSPTPIQRQAIPAVLAGRDLLAAAQTGTGKTGAFGLPLL
QRLVQEGPAVAPNHIRALILTPTRELAEQVHASLRDYAQHLPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLFSQNAVRFDQVQLLVLDEADRMLDLGFSRQLGELFVMLPRKR
QTLLFSATFSDAVRQLAAPVLRDPQTLDVSPRNTAAVTVKQWVVPVDKKRKTELFLHLYR
SGRHGQVLVFAKTRKGVEQLVEALQAEDLAAESIHGDKPQPARLRALARFKAGEADILVA
TDVAARGLDIQDLPLVVNLDLPIVAEDYVHRIGRTGRAGNQGQAVSLVCADEVEQLAAIE
TLIGQILMRRDEPDFIPDHRVPQTGPGGLVMKKPKKPKKPKAGGLVSDKPLGRWVEDGKP
KVKSVRKSPGFGKPRK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgccgacctcggcctcatcgatccgctgctgcaggcgctcgccgccctggag
cacagctcccctacccccatccagcgtcaggctatccccgcggtgctggcgggtcgcgac
ctgctggccgccgcccagaccggcaccggcaagaccggcgccttcggcctgccgctgctg
cagcgactggtgcaggaaggcccggcggtggcgcccaaccatatccgcgcgctgatcctc
acgcccacccgcgagctggccgaacaggtccatgccagcctgcgcgactatgcccagcac
ctgcccctgcgcaccgcggtggcctatggtggcgtgagcatcaatccgcagatgatgaaa
ctgcgtaaaggtgtggatgtgctggtggcgaccccaggtcgcctcctcgatctgttcagc
cagaacgccgtgcgcttcgaccaggtgcagctgctggtgctggacgaagccgatcgcatg
ctcgacctgggcttttcccggcaactgggcgagctgttcgtcatgctgccgcgcaagcgc
cagaccctgctgttctcggcgaccttctccgacgccgtgcgccaactggccgccccggtg
ctgcgcgatccccagaccctcgacgtcagcccgcgcaacacggccgccgtcaccgtcaag
cagtgggtcgtgccggttgacaagaagcgcaagaccgaactcttcctgcacctctatcgc
agcggtcgccacggccaggtgctggtgttcgccaagacgcgcaagggtgtggagcaactg
gtggaagccttgcaggccgaggatctggcggcggaatccatccatggcgacaagccccag
ccggcgcggctgcgcgccctcgcccgcttcaaggccggcgaggcggacatcctggtcgct
accgatgtggctgcccgcggcctggacatccaggacctgccgctggtggtcaacctggac
ctgcccatcgtcgccgaagattacgtgcaccgcatcggccgcaccgggcgcgcgggcaac
cagggccaggcggtttcactggtctgcgccgatgaagtcgagcaactagcggccatcgag
acgctgatcggccagatcctcatgcgccgcgacgagccggatttcatccccgaccaccgc
gttccccagaccggtccgggcggactggtcatgaagaagcccaagaagccgaagaaaccc
aaggcgggtggactggtatccgacaagcccctgggtcgctgggtggaagacggcaaaccc
aaggtcaagtcggtgcgcaagtcgcccggcttcggcaagccacgcaagtaa
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