Pseudomonas benzopyrenica: V6W80_16145
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Entry
V6W80_16145 CDS
T10550
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
pben Pseudomonas benzopyrenica
Pathway
pben02020
Two-component system
pben02025
Biofilm formation - Pseudomonas aeruginosa
pben02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V6W80_16145
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
V6W80_16145
09142 Cell motility
02040 Flagellar assembly
V6W80_16145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pben03000
]
V6W80_16145
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pben02035
]
V6W80_16145
Transcription factors [BR:
pben03000
]
Prokaryotic type
Helix-turn-helix
Other families
V6W80_16145
Bacterial motility proteins [BR:
pben02035
]
Flagellar system
Flagellar assembly proteins
Others
V6W80_16145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
nSTAND3
AAA_7
AAA
AAA_19
bpMoxR
HTH_30
Motif
Other DBs
NCBI-ProteinID:
WWM65242
LinkDB
All DBs
Position
complement(3412420..3413898)
Genome browser
AA seq
492 aa
AA seq
DB search
MWRETKILLIDDEAERRKAVSVILDFLGEAHLACTSSDWQSSLEALDSSRQVSCVLVGRV
DSRGNSVELLKQIVAWDEMVPLLLLGESAQPEWPDDVRRRVLVSLEYPLAYNKLLDSLHR
AQVYREMYDQARDRGRQREPELFRSLVGTSRAIQGVRKMMQQVADTEATVLILGESGTGK
EVVARNLHFHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANTG
TLFLDEIGDMPLPMQVKLLRVLQERTYERVGSNKTQSVDVRIIAATHKNLEQMIAAGTFR
EDLYYRLNVFPIDMAPLRERGEDIPLLINELIARMEHEKRGSIRFNSAAIMSLCRHEWPG
NVRELANLVERMAIMHPYGVIGVAELPLKFRYVEDEADPMVESLREELQEREAMAGIGTV
EVSSSALLPSEGLDLKDYLANLEKSFIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYG
MGRRDDEFDEEI
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaagatccttctgatcgacgatgaagccgagcggcgcaaggcggta
tcggtcattctcgattttctcggcgaggcgcatctcgcctgcaccagttccgattggcag
tcctccctcgaagcgctcgacagcagtcggcaagttagctgcgtgctggttgggcgcgtc
gacagtcgcggcaacagtgtcgagctgctcaagcagatcgtcgcctgggacgagatggtc
ccattgctgctactcggtgaatcagcgcaaccggagtggccggacgacgttcgccgtcgt
gtgctggtctccctcgaatatccgctagcctacaacaagctgctggattccctgcaccgc
gctcaggtctatcgcgagatgtacgaccaagcccgggatcgcgggcgtcagcgcgagccc
gaactgttccgcagcttggtaggcaccagtcgcgccatccagggtgtgcgcaagatgatg
cagcaggtggccgataccgaggccacggtgcttatcctcggcgagtccggcaccggcaaa
gaggtggtggcgcgcaacctgcacttccactccaagcgccgcgaggcgcccttcgtgccg
gtcaactgcggcgcgattcccgcggagttgctggaaagcgagctgttcggccatgagaag
ggcgccttcaccggcgccatcaccagccgcgccggccgcttcgagctggccaacaccggc
accctgtttctcgatgagatcggcgacatgcccttgcccatgcaggtcaagctcttgcgt
gtgctgcaggaacggacctacgaacgggtgggcagcaacaagacccagagcgtggacgtg
cgcatcatcgcggcgacccacaagaatctggagcagatgatcgccgcgggcaccttccgc
gaagacctctactatcgcctcaatgtcttccccatcgacatggcgcctttgcgcgagcgg
ggtgaagacatcccactgctgatcaacgaactgatcgcccggatggagcacgagaagcgt
ggctccatccgcttcaactcggcggccatcatgtcgctgtgccgccacgagtggccgggc
aacgtccgtgagctggccaacctggtggagcgcatggcgatcatgcatccctatggcgtt
atcggcgtggccgaattgccactcaagttccgctacgtggaggacgaagccgatcccatg
gtggagtccctgcgcgaggagttgcaggagcgcgaggccatggctgggatcggcaccgtc
gaggtgtcgtcctctgcgttgctgcccagcgaaggcttggatctaaaggactacctggcc
aatctggaaaagagtttcatccagcaggcgttggacgatgccggtggcgtcgtggcccgt
gccgccgagcggctgcgcatccgccggaccaccctggtcgagaagatgcgcaagtacggc
atgggccgtcgcgacgacgagttcgacgaagagatctag
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