Pseudomonas benzopyrenica: V6W80_18680
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Entry
V6W80_18680 CDS
T10550
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
V6W80_18680 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pben03400
]
V6W80_18680 (sbcB)
Enzymes [BR:
pben01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
V6W80_18680 (sbcB)
DNA repair and recombination proteins [BR:
pben03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
V6W80_18680 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V6W80_18680 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V6W80_18680 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WWM65725
UniProt:
A0ABZ2FM02
LinkDB
All DBs
Position
complement(3926662..3928116)
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AA seq
484 aa
AA seq
DB search
MTQSIFWYDFETTGIDPRRDRPLQVAGVRTDLDLNEIEAPLNLHCRLSEDVLPHPAACLV
TGILPATLQRLGLRERDFVQRLHEELRRPNTCTVGYNNLRFDDEMVRHSLYRNFHDPYAR
EWQQGNSRWDVLGLIRALYAFRPESLSWPQEEQRVSLRLDRLTVANGIDHAQAHDALADV
RATLALARLVKQRQPKLYDYLWTQRQKKAALTRIRLLEPLLHVSGRFSAERHFLAPVLPL
AWHPVNRNALIVCDLGLAPEPLLELDVEALRERLYTRREALAEGELPVPLKLVQINKCPI
LAPFSVLRPVDTERLQFDLAAVWRRVRQLLDQRAHWQPKVQALYAEASGFTAQEQDAELR
LYDGFISAQERQLCEQVQQCPAEQLGSRTWAFQDERHPELFFRYRARNFSELLTAEEGAR
WRQFCRQRLLGEDGQGHMTCKQFLTLTEQLRFEVAADLVPILEAWSAHVRGVMQQLDNPV
IDVT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcaaagtatcttctggtacgacttcgagaccacggggatcgatccacggcgggat
cgaccgctgcaggtggccggggtgcgtaccgatctggacctcaacgaaatcgaggcgccg
ctcaatctgcattgccggttgagcgaggatgtcctgccccatccggcggcctgcttggtc
actgggatcctgccggccaccctgcagcgcctggggctgcgcgagcgcgacttcgtccag
cgcctgcacgaggagctgcggcgtcccaacacctgcacggtcggctacaacaacctgaga
ttcgacgacgaaatggtgcggcacagcctgtaccgcaacttccatgatccctatgcccgc
gaatggcagcagggcaacagtcgctgggatgtactcggtctgatccgggcgctctatgcc
tttcgcccggagagcctgagctggccgcaggaggagcagcgcgtttccctgcgtctggac
cgcctgaccgtcgccaatggcattgaccatgcccaggcccatgacgccctggcggacgtc
cgcgcgaccctggccctggcgcgcctggtcaagcagcggcagcccaagctctacgactat
ctctggacgcagcgtcagaaaaaggcagcgctgacgcgtattcgtctgctcgaacccctg
ttgcatgtctctgggcgcttcagcgctgagcggcactttctcgcccccgtcctgccgttg
gcctggcatccggtcaatcgcaatgcgctgatcgtctgtgatcttggtctggcgccggag
ccgttgctggaactggacgtcgaggccctgcgcgaacgcctctatacccggcgggaggcg
ctggccgagggtgaactaccggtaccgctcaagctggtacagatcaacaagtgtccgatt
ctggcgcccttcagcgtgctgcgcccggtggatacggagcgcctgcagttcgatctggca
gccgtctggcggcgcgtccggcaactgctcgaccagcgtgcgcactggcaacccaaggtg
caggcactctatgccgaggcgtccggctttacagcgcaagaacaggatgccgaattgaga
ctgtacgacggcttcatctctgcccaggaacggcaactctgcgagcaagttcagcagtgt
ccggcggagcaacttggcagtcgaacgtgggcgttccaggacgagcggcatcccgagctg
ttctttcgttatcgagcgcgcaacttttccgagttgctgacggcggaagagggtgcccgt
tggcggcaattctgtcggcagcgactgctgggtgaagacggccaaggccatatgacctgc
aagcagtttctcaccttgaccgaacaactgcggtttgaggtcgctgctgatctggtgccg
attctcgaggcctggtcagcccatgtcagaggcgtgatgcaacagttggataaccctgtt
atcgatgtgacataa
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