Pseudomonas benzopyrenica: V6W80_19360
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Entry
V6W80_19360 CDS
T10550
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pben Pseudomonas benzopyrenica
Pathway
pben03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
V6W80_19360 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pben03400
]
V6W80_19360 (recC)
Enzymes [BR:
pben01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
V6W80_19360 (recC)
DNA repair and recombination proteins [BR:
pben03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V6W80_19360 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
WWM65855
LinkDB
All DBs
Position
complement(4072687..4076118)
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AA seq
1143 aa
AA seq
DB search
MSEALTPGFMVVHGNRLEELRGLAVGWMRRYPLAPLENEQVLVQSNGIAQWLKLALAEDP
RGDDEGGCGVAAALEVQLPAAFLWRTYRQVLGRDQVPPSSPLDRAPLTWRLMRLLPTLLL
QPDFAALRRFLDDDGDLRKRYQLAERLADLYDGYQVYRADWLNDWAAGRDLLASLRDGRR
PLPESCRWQAQLWRALLDDVGDGGLARSRAGVHRRFLEVMQAATEAPAGLPRRVVIFGLS
AIPAQTLEALAALARFSQVLLCVHNPCRHHWSDIVADQDLLRQNYRRQQRKPGMPQTLDA
EALHQHGQPLLASWGKQGRDYIHLLDEFDEPDGYRRLFEDLNGGRIDLFAETEPQHLLGQ
LQDDILELRPLTETRERWPAVDPARDRSMRFHVAHSPQREVEILHDQLLARFNSDSSLRP
RDVIVMVPDIDAYAPHIRAVFGQLDRQDPRFIPFSLADQHQRGFQPLLIALEHLLQLPDS
RFALSEILDLLDVPALRTRFGLREGDLPTLHLWLEGAGVRWGLDAEQRSRLDLPEGLTQN
TWRFGLRRMLLGYAVGSGAALGDIEPFDEVGGLDAALVGPLVDLLDALDAAQAALAQPAR
PAEWGARLQALLALFFSAQDEHDEYLLEQLENLRERWLELCEDVALDEELPLTVVREAWL
AGLDSGGLAQRFLAGAVNFCTLMPMRAIPFRVVCLLGMHDGAYPRIQSPLDFDLMAQDYR
PGDRSRREDDRYLLLEALLSARDQFYVSWVGRSIRDNSERPPSVLVAQLRDHLQAGWRLA
GHEEEPERLLAALTQEHPLQPFSARYFRGERGYFSFAAEWLGVHDRTTRNEDALLPLLVP
EEPLGLDDLARFLRGPVDLFFANRLKVHFAAPDAPAEDEEPFGLDALTRYQLGEDLLAAA
LAEPAEADQALMAAAERLRGSGRLPLAGFGERAGRALREPLPAVVAQVEALTLRWPEPLE
EAVTLDLAHKELQLVANLERLRRGPEGLLALTAQANGLGNTRTRKWHRLLRPWVQHLVAA
AGGLKLTTAVVATDLTLLLAPLDAELARRQLDELLDAWALGQRRPLPVAPRTAFAWLANE
PDKALAAAEQAYQGEAATHPALRRQYPDFAALLADEEFDGWCQTLYAPVHTAGWQVVGGE
GQA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaggcgctcactcccggattcatggtggtacacggcaatcggctcgaagagctg
cgcggcctggcggtcggctggatgcggcgctatcccctggcgccgctggaaaacgaacag
gtgctggtgcagagcaacggcatcgcccagtggctcaagctggcgctggccgaggatccg
cgcggcgacgacgagggtggctgcggagtcgccgcagccctcgaggtgcagttgccagcg
gcctttctctggcggacctatcgccaggtgctgggtcgtgaccaggtaccgccatcctcg
ccgctggaccgcgcacccctgacctggcgcctgatgcgactcctgccgaccctgctcctg
cagcccgacttcgccgcactgcggcgttttctcgacgatgacggcgatctgcgcaagcgc
taccaactggccgagcgtctggccgatctctatgacggctaccaggtctaccgcgccgac
tggctcaacgactgggcagcgggccgcgatctgctggccagcctgcgcgacggtcggcgt
cccttgccggaaagttgccgttggcaggcgcagctgtggcgggcgctgctggatgatgtg
ggcgatggtggtctggcccgcagccgtgccggcgtgcaccggcgctttttggaggtgatg
caggcggctaccgaagcgccggccggtctaccgcggcgggtggtgatttttggtctgtcg
gcgatcccggcgcagaccctcgaagccctggccgcgctggcgcgcttcagccaggtgctg
ctctgcgtgcacaatccctgtcgccaccactggtccgacatcgtcgccgaccaggatctc
ctgcggcagaactatcggcgccagcagcgcaagccgggcatgccccagacgctggatgcc
gaggcgctgcatcagcatggtcagccgctgctcgcgagctggggcaagcagggccgcgac
tacatccacctgctggacgagttcgacgagcccgacggttatcgtcggctgttcgaggac
ctcaacggcggacgcatcgacctcttcgccgagactgaaccccagcatctgctcggtcag
ttgcaggacgatatcctcgagctgcgcccgctgaccgagacccgcgaacgctggccggca
gtggatccggcgcgggacagatccatgcgcttccatgtggcccacagtccgcagcgcgag
gtggagattctccacgaccagctcctggcgcgcttcaacagcgacagcagcctccggccg
cgcgacgtcatcgtcatggtgccggacatcgacgcctatgcgccgcacattcgtgcagtg
ttcggccagctcgaccgccaggatccgcgtttcattcccttcagcctggctgaccagcac
cagcgtggcttccagccgcttttgatcgccctggagcatctgctgcagctgcctgacagc
cgcttcgccctgagcgagatcctcgacctgttggacgtcccggccctgcgtacccgcttc
ggcctgcgtgagggtgacctgccgaccttgcatctctggctggaaggcgccggcgtgcgc
tgggggctggatgccgagcagcgcagtcgcctcgacctgcccgaaggtctgacccagaac
acctggcgcttcggcctgagacgcatgctgctgggctacgccgtgggcagtggcgccgcc
ctgggcgatatcgagcccttcgacgaggtgggtggcctggacgcggccctggtcgggccg
ctggtggatctgctcgatgccctggacgcggcccaggcggcgctggcccagccggcccgg
ccggcggagtggggcgcccgcctgcaggcgttgctggcgttgttcttcagtgcccaggac
gagcacgacgaatacctgctggagcagctggaaaatctccgtgagcgctggctggagttg
tgcgaggacgtcgccctggatgaagagctaccgctcaccgtggtccgcgaggcctggctg
gccggactggattccgggggcctggcccagcgctttctcgccggggcggtcaatttctgc
accctgatgcccatgcgcgccatccccttccgcgtggtctgtctgctgggcatgcacgac
ggtgcctatccgcgcatccagtcgccgctggatttcgacctcatggcccaggactatcgc
cccggtgaccgctcgcggcgcgaggacgaccgctatctgctgctggaggcgttgctctcg
gcgcgcgatcagttctatgtcagctgggtggggcgcagcatccgcgacaacagcgagcgc
ccgccgtcggtgctggtcgcccagttgcgtgaccatctccaggccggttggcggctggcg
gggcatgaagaggagccggagcgcctcctggcggccctgacccaggagcatccgctgcaa
cccttcagcgcccgttacttccgcggcgaacgtgggtatttcagctttgccgctgaatgg
ctgggcgtgcatgaccgcaccacgcgcaatgaggatgccctgctgccgctgctggtaccc
gaagagcccctgggcctcgatgatctcgcccgctttctgcgcggaccggtggatctgttc
ttcgccaatcgactcaaggtgcatttcgctgcgcccgatgcgccggcggaagacgaagag
cccttcggtctggatgccctgacccgctaccagttgggcgaagacctgctggcggcggca
ctggctgagcctgccgaggccgaccaggcgctcatggccgccgcggagcgcctgcgcggc
agtggtcgcttgccgctggcgggttttggcgagcgggccgggcgggccttgcgcgagcct
ctgcctgccgtggtcgcccaggtcgaggccctgacgctacgctggcccgaacccctggaa
gaggccgtgaccctggatctcgcacacaaagagctgcaactggtggccaacctcgaacgc
ctgcgtcgtggccctgagggcctgctggccctgaccgcccaggccaatggcctgggcaat
acccgcactcgcaagtggcaccgattgctacggccctgggtgcagcatctggtcgctgcg
gcgggtggcctgaaattgaccaccgcggtggtggcgaccgatctgaccctgctgctggcg
ccgctggacgccgagttggcccggcggcagctggatgaattgctggacgcctgggcactg
ggccagcggcgtccgttgccggtggcgccgcgcaccgccttcgcctggctggccaatgag
ccggacaaggccctggccgcggccgagcaggcctatcagggcgaggcggcgacccatccg
gcgctgcgtcggcagtatccggatttcgccgcgctgctggccgacgaggaattcgacggc
tggtgccagaccctctatgcgccggtgcataccgccggctggcaggtggttggtggggag
ggacaggcatga
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