Pseudomonas benzopyrenica: V6W80_23415
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Entry
V6W80_23415 CDS
T10550
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pben Pseudomonas benzopyrenica
Pathway
pben02025
Biofilm formation - Pseudomonas aeruginosa
pben03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pben00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
V6W80_23415 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
V6W80_23415 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pben02044
]
V6W80_23415 (tssM)
Secretion system [BR:
pben02044
]
Type VI secretion system
Imp/Vas secretion system core components
V6W80_23415 (tssM)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
AAA_29
Motif
Other DBs
NCBI-ProteinID:
WWM66624
UniProt:
A0ABZ2FS45
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All DBs
Position
4963382..4966630
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AA seq
1082 aa
AA seq
DB search
MKGFIIALGRTLRRPWAWTLLVALSLGSLVWTLGPLLAFAGHSPWTSVTHRLATLCGLLL
AWGLAMALLQGWQQRQRRLHLATEAGQHDQLRAERINDEAHELQSRARDAYSTLQGAGLY
RGRSQRWRRELPHYLLLGPEGAGKTSLLDFSGLEFPLNTERSRLTRDVSGTRHCDWYFAE
QGVLLDTAGRYLTQGDAPVDSSAWQTLLQLLRSQRRTRPLNGILVVLPVAQLTSGNEVAL
EILARQVRARLHEVARELKVEVPVYLVLTQTDQLPGFDAFFDGLSREEGEQVLGTTFRET
QNGTDPEVLRQEFEELLRRLNSQVIPRIHQERDGQRRGQILDFPHQLGRLGDGLTLFVEL
AFSGNRYQRAAQLRGFYLTSTPALTQRLDAQTQGIGDQLGLPSSLLPQYRSGQPRFIRQL
FNRVIFPEASLAGLDQRELRRLSWGQRGLYAAALASLALGAALWTGSFAGNHERLERLRD
LAQHGTQARSQLKAGADARAVLPVLDNAYAGTQVFPAAGATPLRERTGLYQGEAVRPATE
AVYHQALDSYLLPRLKAQLEERIRGSLGDREQLIGHLRAYLMLQLPERRDTRALRTWAAA
DWSQRYPGDALTQNGLDTHLARLLEQGFGAYPVDAHLVTQARQVLRSESIAAVVYRILRD
QASGLPVYRLSQHLGAQALAFEGADYPIPGFYTREGYAQTFSTQGLAVIRELAADNWVLG
DGDGDGITGMDLRHLQVELEQLYFRDYANQWSEALARVTLQPVGDANQGAALLAGLTSAN
SPLLQLLVEVRTNTRLAASANALAGQGDALPDTARRSLQNRFENLHRLLDEQGAAAADLA
PAMASLNDLQQQLAGLAHASAPEQAAFELAKARMAGNRDVLNSLRNASSRLPTPVNGWLG
LLVDDSWNLILAGAYDYINGRYQSELLASYRTALDKRYPFKADSESDVSLVDFREFFKAQ
GVADSFFEAYLKPFVARGESDAYRHGPIVAATFRWPQNDAFRTTLVLEELGGRRVGLEQD
GSAWSLFRLLDRMKLQQHSVRDVLLVQADLEGRHAGYLLSSQRSPNPFDLATLRGFKLPE
RL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggattcatcattgcactcgggcgcacgctgcgccgtccctgggcctggacactg
ctcgtagccctgagcctgggcagtctggtctggaccctcggtcccctgctggcctttgcc
ggccacagtccctggacctcggtcacccatcgcctggccaccctctgcggcctgctcctc
gcctgggggctggccatggcgctgctgcagggctggcagcagcgtcagcgccgactgcat
cttgcgaccgaagcgggccagcacgatcaactgcgcgccgagcgcatcaacgacgaggcc
catgaactgcagtcccgcgcccgcgatgcctacagcaccctgcagggtgctggcctctat
cgagggcgcagccagcgttggcggcgtgagctgccccactatctgttgctgggtccggaa
ggtgccggcaagacctcgctgctggacttctccggtctcgaatttccgctcaacacggag
cgctcccggctgacccgcgacgtcagcggtacccgtcattgcgactggtacttcgccgaa
cagggggtgctcctggacaccgccggccgctacctgacccagggcgatgccccggtggac
agcagcgcctggcagaccctgctgcagctgctgcgcagccagcggcggacccggccgctc
aatggcatcctcgtcgtcctgcccgtggcgcaactgaccagtggcaacgaggtcgccctg
gaaatcctggcgcgccaggtgcgcgcccgcctgcatgaggtagctcgcgaactcaaggtc
gaggtacccgtttatctggtgctaacccagactgatcagctgcccggcttcgacgccttc
tttgatggcctctcccgcgaggaaggcgagcaggtgctgggcaccacctttcgtgaaacc
cagaacggtaccgatcccgaggtgctgcgccaggagttcgaggaactgctgcgccgcctc
aacagccaggtcatcccgcgtatccatcaggagcgcgacggccagcgccgtggccagatc
ctcgactttccccatcagctgggccgtctgggcgatggcctcaccctgttcgtcgagctg
gccttttccggcaatcgctaccagcgtgcggcccagttacgcggcttctacctgaccagt
actccggcactgacccaacggcttgacgcccagacccaaggcatcggcgatcagctcggc
ctacccagcagcctgctgccccagtaccgcagcggccagcctcgctttatccgccagctg
ttcaatcgcgtgatctttcccgaggcgtccctggccggcctcgaccaacgcgagctgcgc
cgattgagctggggacagcgaggtctctatgccgcagccctggccagcctggccctgggt
gcggcgctctggaccggcagcttcgcgggtaaccacgaacgcctcgaacgtctgcgcgat
ctggcacagcacggcacgcaggcacgcagccaactcaaggccggcgccgatgcccgcgcc
gtgctgccggtgctggacaacgcctatgccggcacccaggtctttcccgccgccggcgcc
acgccattgcgcgaacgtaccggactctatcaaggggaggccgtgcgccctgctaccgag
gcggtctatcaccaggccctggacagctacctactgccacggctcaaggcgcaactggaa
gaacgcatccgcggcagcctaggcgaccgggagcagctgatcggccacctgcgtgcctac
ctgatgctgcagctacccgaacgccgcgacactcgcgccctgcgcacctgggccgccgcc
gactggtcgcaacgttacccgggtgacgcccttacccagaacggcctggacacccatctg
gcgcggctattggagcagggcttcggcgcctatccagtggatgctcatctggtgacccag
gcacgccaggtgctgcgtagcgaatccatcgccgcggtggtctatcgcatcctgcgcgac
caggccagcggcttgccggtctatcggttgagtcagcacctgggcgcccaggcactggcc
ttcgaaggcgccgactatcccatacccggcttctatacccgcgagggctacgcccagacc
ttttccacccagggcctcgccgtgatccgggaattggccgccgacaactgggtactcggc
gatggcgatggcgacggcatcaccggcatggacctgcgccatctgcaggtggaactcgaa
cagctctacttccgcgactacgccaatcagtggagcgaggcgctcgcccgggtcaccctg
caacccgtgggcgacgccaaccagggcgccgccctcctggccggactgacctcggccaat
tcgccgctgctgcaactcctggtggaggtacgcaccaacacccgtctcgccgcttcggcc
aacgcgctggcaggccagggcgacgccctgccggataccgcgcgccgcagcctgcagaat
cgcttcgagaatctgcaccggctgctcgacgagcagggcgccgcagcggccgatctcgcc
ccggccatggcctcgctcaacgacctccagcagcaactggcggggctggcccatgccagt
gctccggaacaggccgccttcgagctggccaaggcgcgcatggcaggcaaccgtgatgtg
ctgaatagcctgcgcaatgcctccagtcgcctgcccactccggtcaatggctggcttggc
ctgctggtggacgacagctggaatctgatcctcgccggtgcctacgactacatcaacggg
cgctaccagagcgagctgctggcgagctatcgcacggcactggacaagcgctatccattc
aaggcggacagcgagagcgatgtctccctggtcgacttccgcgaattcttcaaggcccag
ggcgtcgccgacagctttttcgaggcctacctgaaacccttcgtggcccgtggcgagagc
gacgcctaccgccatggtcctatcgtcgccgccaccttccgctggccgcagaacgatgcc
ttcaggaccaccctggtgctagaggagctagggggtcgtcgcgtcggcctggagcaggac
ggtagcgcctggtcactgttccgcctgctggaccgcatgaagctgcaacagcacagcgtt
cgcgacgtgctgctggtacaggctgatctggagggccggcatgccggctatctgctgtcc
agccagcgttcgcccaaccccttcgacctggccaccctacgtggcttcaagctgccggag
cgtctctga
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