Pseudomonas berkeleyensis: HS968_15380
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Entry
HS968_15380 CDS
T12034
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pber Pseudomonas berkeleyensis
Pathway
pber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS968_15380 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pber03019
]
HS968_15380 (recQ)
03400 DNA repair and recombination proteins [BR:
pber03400
]
HS968_15380 (recQ)
Enzymes [BR:
pber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HS968_15380 (recQ)
Messenger RNA biogenesis [BR:
pber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HS968_15380 (recQ)
DNA repair and recombination proteins [BR:
pber03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HS968_15380 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
HTH_23
Sigma70_r4_2
ResIII
GerE
HTH_29
Transposase_mut
Motif
Other DBs
NCBI-ProteinID:
QMV61421
UniProt:
A0A7G5DI46
LinkDB
All DBs
Position
complement(3303303..3305435)
Genome browser
AA seq
710 aa
AA seq
DB search
MLDHAQRILKDVFGYDAFRGNQAAIIERVAAGGDALVLMPTGGGKSLCFQVPALMREGLA
VVVSPLIALMDDQVATLDELGVAAVALNSTLSVDEQREIADRIRRGQIKMLYLAPERLVQ
PRMLSFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPEVPRIALTATADKRT
REEIVQRLHLENAERFLSSFDRPNIFYRIQPKDQPRKQLLGFLAARKGDAGIVYCLSRKK
VEEVADFLSSQGFPALPYHAGLPNELRAFNQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
CHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHK
LDAMLALCEETRCRRQALLAYFDEELPNPCGHCDNCIDGVETWDATEPARQALSAVYRSG
QRYGVGHLLDILLGRDNEKIRASGHQHLAVFGVGKGFSEVEWRTLFRQLVARGLADVDLD
GFGGLRLAESCRPLLRGEVSLQLRREPKPAQAAKASSSAASQLVRGHEREMWEALRSLRR
KLAEEHSVPPYVIFPDATLLEMLRSQPGSLSEMAEVSGVGARKLERYGQAFLEVLNGGAA
DEAPAPVADLRHELVSLARAGMTPTQIAGQLGCSEKNVYSLLAEAIAQQQLTLEQALDLP
EELLGEIQETFLDGEGELPAVSEIAPLFAGRVDEAVLYCVRAALQAEFEM
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccacgcccagcgcattctcaaagacgttttcggctacgacgcttttcgcggt
aaccaggccgcgatcatcgagcgcgtggccgcgggcggcgatgctctggtgctgatgcct
actggcggcggcaagtcgttgtgcttccaggtgccagcactgatgcgcgaaggcctggcg
gtggtggtttcaccgttgatcgcgttgatggacgatcaggtggccaccctcgacgaactg
ggtgtggctgccgttgcgctgaactccaccctcagcgtcgatgagcagcgcgagattgcc
gaccgcatccgtcgcgggcagatcaagatgctctacctggcacctgaacgcctggttcag
ccgcgcatgctgagtttcctgcaggggctggacatcgccctgttcgccatcgacgaggcg
cactgcgtctcgcaatggggccacgatttccgtccggagtacctgcagctcgggcaactg
gctgagctgttccccgaggtgccacgtattgccctgaccgccacggcggacaagcgcacc
cgcgaagaaatcgtccagcgcctgcatctggaaaacgccgagcgttttctgtcgagtttc
gaccggccgaacatcttctaccgcatccagcccaaggatcagccgcgcaagcagttgctc
ggcttcctggccgcgcgcaagggtgatgccggcatcgtctactgcctgtcgcgcaagaag
gtcgaggaggttgccgactttctcagcagccagggcttcccggctttgccctatcacgcc
ggcctgcccaacgagttgcgtgccttcaatcagaagcgctttctcaatgaggaaggcctg
atcatggtggccaccattgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtc
tgccacctggatctgcccaagtcgctggaggcctactaccaggagaccggtcgtgccggt
cgtgacggcttgccggccgatgcctggatggcctacggcctgcaggacgtgatattcctc
aagcagatgctcaacaactccgaaggtgacgagcgccacaaacgcatcgagcagcacaag
ctcgatgccatgctcgcgctgtgcgaggagacgcgctgccggcgccaggcgctgctggcc
tacttcgatgaagaattgcccaatccttgcggtcactgcgacaactgcatcgacggtgtc
gagacctgggacgccaccgagccggcccgccaggcattgtcggccgtctatcgcagtggt
cagcgctatggcgttggccatctgttggacattctgctcggccgtgacaacgagaaaatc
cgcgcctccggtcaccagcacctggcggtattcggcgtcggcaagggcttttccgaagtc
gagtggcgcacgctgtttcgccagctggtcgcccgtggtctggccgatgtcgacctggac
ggttttggtggtttgcgcctggccgagagttgcaggccgctgttgcgtggcgaggtcagc
ctgcagctgcgccgtgagcccaagccggcgcaggcggccaaggcctccagcagcgcagcc
agccaactggtacgtggccacgagcgggagatgtgggaagcgctgcgcagcctgcgccgc
aagttggcggaggagcacagcgtgccgccgtacgtgattttccccgatgccacgctgctg
gagatgctgcgcagccagcccggctcgctgagcgagatggccgaggtcagcggcgtcggt
gcgcgcaaactcgaacgttacggccaggccttcctggaggtgctcaatggcggcgcggca
gacgaggcgccagctcccgttgccgatctacgccatgaactggtcagcctggctcgcgcc
ggcatgaccccaacgcagatcgccgggcaactgggttgcagcgagaagaacgtctacagc
ctgctggccgaggccatcgcccagcagcaactgacccttgagcaggcgctggatctgccc
gaagaattgctcggcgagattcaggaaaccttcctcgacggcgagggcgagctgccagca
gtgagcgaaatcgcgccgctgttcgccggccgggtcgacgaggcagtgctctattgcgtg
cgtgcggcactgcaggccgagttcgaaatgtga
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integrated database retrieval system
