Pseudomonas berkeleyensis: HS968_20440
Help
Entry
HS968_20440 CDS
T12034
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
pber Pseudomonas berkeleyensis
Pathway
pber02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pber00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HS968_20440
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pber02022
]
HS968_20440
02035 Bacterial motility proteins [BR:
pber02035
]
HS968_20440
Two-component system [BR:
pber02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
HS968_20440
Bacterial motility proteins [BR:
pber02035
]
Pilus system
Twitching motility proteins
HS968_20440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_50
AAA_5
Pre_tape_measure
AAA_19
HTH_30
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QMV62380
UniProt:
A0A7G5DKV5
LinkDB
All DBs
Position
4407920..4409260
Genome browser
AA seq
446 aa
AA seq
DB search
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDG
TGLELVQHIQQRYPQVPVAMITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALR
IRSPECGETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVYISGESGSGKELVARLIHEQG
PRVEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKLGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIE
LRVPPLRERREDIAQLADVMLTRLADSTGLAAAKLHPDALEKLKNYRFPGNVRELENMLE
RAYTLCEDDQITPSDLRLADASGPSNEGGEASLAQIDNLEDYLEDIERKLIMQALEETRW
NRTAAAQRLGLTFRSMRYRLKKLGID
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtcagagagcactgatcgtcgacgacgagcccgatatccgcgagttgctggaa
atcaccctcggacgcatgaagctggacacccgcagcgcccgcaacgtcaaggaagcacgc
gaatggctggcgcgcgaacccttcgatctgtgcctgaccgacatgcgcctgcccgacggc
accggcctggaactggtgcagcacatccaacagcgctacccacaagtgccggtggcgatg
atcaccgcctacggcagcctggataccgcgatcaactcgctcaaagccggcgccttcgac
ttcctcaccaaaccggtagatctcggtcgcctgcgcgaactggtcgccaccgccctgcgc
atccgctcccccgagtgcggggaaaccccggtcgacagccgcctgctcggcgattcgccg
cccatgaagtcgctgcgcaagcagatccagaagctctcgcgcagccaggcaccagtctat
atcagcggtgagtcgggcagcggcaaggaactggtcgcccgcctgatccacgagcagggc
ccgcgcgtcgaacagcccttcgtcccggtcaactgcggcgccatcccctctgagttgatg
gagagcgagttcttcgggcacaagaaaggcagcttcactggcgccatcgaagacaagctg
ggcctgttccaggcggccaatggcggcacgctgttcctcgatgaagtcgccgacctgccg
ctgccaatgcaggtaaaactgctgcgtgcaattcaggaaaaagccgtgcgcgccgtcggc
ggtcagcaggaagtggtggtcgacgtacgcatactctgcgccacccacaaggatctcgcc
gccgaagtcgccgccggccgcttccgccaggatctctactaccgcctcaacgtcatcgaa
ctgcgcgtaccgccgctgcgtgagcgtcgcgaagatatcgcccagctggccgacgtgatg
ctcacgcgcctggccgacagcaccggccttgctgctgccaagttgcatcccgatgcgttg
gagaaactgaagaactaccgcttccccggcaacgtgcgcgagctggaaaacatgctcgag
cgcgcctataccctgtgcgaagacgaccagatcacacccagcgacctgcgcctggccgac
gccagcggccccagcaacgaaggcggcgaagccagcctggcgcagatcgacaacctcgag
gactacctcgaagacatcgagcgcaaactgatcatgcaggccctggaagaaacccgctgg
aaccgcacggccgcagcccagcgccttggccttaccttccgctcgatgcgctatcgcctg
aagaagctgggcatcgactga
DBGET
integrated database retrieval system
