Pseudomonas berkeleyensis: HS968_20935
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Entry
HS968_20935 CDS
T12034
Name
(GenBank) efflux RND transporter permease subunit
Organism
pber Pseudomonas berkeleyensis
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Ortholog
Paralog
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
DUF6366
Motif
Other DBs
NCBI-ProteinID:
QMV62471
UniProt:
A0A7G5DL46
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Position
4516563..4519706
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AA seq
1047 aa
AA seq
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MSRFFIDRPIFAWVIALVIMLAGGLSILKLPINQYPSIAPPAVSIQVSYPGASAQTVQDT
VVQVIEQQLNGIDGLRYVSSSSNSDGSMEIIVTFEQGVNPDIAQVQVQNKLQLATPLLPQ
EVQQQGIRVTKSVRNFLMVIGVVSKDGSMTREDLSDYIVSNLQDPISRTKGVGDFQVFGA
QYAMRIWLDPAKLNSFQLTPVDVRSAIQAQNVQISSGQFGGLPAAPGNQLNATIIGKTRL
QTPEEFRKILLKVQADGSQVRLGDIAKVELGGENYAINAQFNGLPASGLAIRLATGANAL
DTAKAVRETISNLEPFFPAGMEVVFPYDTTPVISASIEGVVQTLFEAIVLVFLVMFLFLQ
NLRATIIPTMAVPVVLLGTFGVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM
REEGLSPKEATRKSMGQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMAL
SVLVALIFTPALCATLLKPIDGDHHEAKRGFFGWFNRTFERSSNAYQRGVAGMLKRKTPY
LLLYLVIVGIMVFMFTRIPTAFLPEEDQGVLFAQVQTPSGSSAERTQVVVDEMRQYLLED
ETSTVKSVFTVTGFNFAGRGQSSGMAFIMLKPWGERPGAENGVAALAQRAQMHFFSFRDA
MVFAFAPPAVMEMGNATGFNFFLQDQAGVGHEVMNEARDKFLKLANEHPVLDSVRANGLR
DEAQYQLLIDDERARALGLSLADINSTLSIAWGASYVNDFIDRGRVKKVYLQGASEARMS
PEDLNKWYVRNDQGQMVPFSAFASGEWTYGAPKLARYNGVSAVEILGAPAPGYSTGDAMA
AVEDIASQLPQGVGYSWTGLSYEERLAGSQTTALFVISAIVVFLCLAALYESWSIPFSVM
LVVPLGIIGALLFTELRGLSNDVFFKVGLLTTIGLSARNAILIVEFAKAQYEQGMTFAEA
AIEACRMRLRPIIMTSLAFILGCLPLAIASGAGAGSKHAIGTGVIGGMLSAMILAIFWIP
LFYVVVCSLFEKKRPEQASEKEKEVLQ
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgtccagattctttatcgaccggccgatcttcgcctgggtgatcgccttggtgatcatg
ctggccggcggcctgtccatcctcaagctgccgatcaaccagtacccaagcatcgcgccg
cccgccgtttccatccaggtttcctacccgggcgcctcggcgcagacggtacaggacacc
gtggttcaggtgatcgagcagcagctcaacggtatcgacggcctgcgctatgtcagctcg
tcgagtaactccgacggcagcatggagatcatcgttaccttcgaacagggggtgaacccg
gatatcgcccaggttcaggtgcagaacaagctgcaactggcgacaccgctgctaccgcag
gaagtccagcaacagggcatccgcgtgaccaagtcggtgcgtaacttcctcatggtcatc
ggcgtggtgtcgaaagacggcagcatgacccgtgaagacctgtcggactacatcgtctcc
aacctgcaggatccgatctcgcgtactaagggcgtcggtgacttccaggtattcggcgcg
cagtacgccatgcgtatctggctcgacccggccaagctcaacagcttccagctgacgcct
gtggatgtgcgcagcgccatccaggcgcagaacgtgcagatttcctccggccagttcggc
ggcctgcctgcggcgccgggcaaccagctcaacgccaccatcatcggcaagacgcgtctg
cagaccccggaagagttccgcaagatcctgctcaaggttcaggccgacggctcccaggta
cgcctgggtgatatcgccaaggtcgagctaggcggtgagaactacgccatcaacgcgcag
ttcaacggcctcccggcttccggtctggcgattcgcctggccaccggtgccaacgccctg
gacaccgccaaggcggtacgtgagaccatttccaacctggaaccgttcttcccagccggc
atggaagtggtcttcccctacgacaccacgccagtgatctcggcctccatcgaaggggtg
gtacagaccctcttcgaagcgatcgtgctggtgttcctggtgatgttcctgttcctgcag
aacctgcgcgccaccatcatcccgaccatggcggtgccggtggtgctgctcggcaccttc
ggcgtactcgcggcgttcggcttctccatcaacaccctgaccatgttcgccatggtgctg
gccatcggcctgctggtggacgatgccatcgtggtggtggagaacgtcgagcgggtgatg
cgcgaagagggattgtcaccgaaggaagcgacgcgcaagtccatgggccagatccagggc
gcgctggtcggtattgccctggtgttgtccgcggtgttcctgccgatggctttcttcggc
ggctccacgggggtgatctaccggcagttctccatcaccatcgtctcggccatggccctg
tcggtgctggtcgcgctgatcttcaccccagcgctgtgcgccactctgctcaagcctatc
gatggcgaccaccacgaagccaagcgcggcttcttcggctggttcaaccgaaccttcgag
cgcagcagcaacgcctatcagcgcggtgtcgccggcatgctcaagcgcaagacgccttac
ctactgctgtatctggtgatcgtcggcatcatggtcttcatgttcacccgcatccccacc
gccttcctccccgaggaagaccagggtgtgctcttcgcccaggtgcagacgccgtccgga
tccagcgccgagcgtacccaggtggtggtcgacgagatgcgccaatacctactggaagac
gaaacgagcacggtcaaatcggtcttcaccgtcaccggcttcaacttcgccggccgtggt
cagagctccggtatggccttcatcatgctcaagccctggggtgaacgccctggcgccgag
aacggcgtcgccgcgctggcgcaacgtgcgcagatgcacttcttcagcttccgcgacgcg
atggtcttcgccttcgccccgccggccgtgatggagatgggtaacgccaccggcttcaac
ttcttcctgcaggatcaggcgggtgttggccacgaggtgatgaacgaggcacgtgacaag
ttcctcaaactggccaacgagcaccctgtactcgacagcgtgcgcgccaacggcctgcgt
gacgaggcgcagtaccagttgctgatcgatgacgagcgcgcccgtgcactgggtctgtcg
ctggcggatatcaacagcaccctgtcgattgcctggggcgccagctacgtcaacgacttc
atcgaccgtggccgggtgaagaaggtctacctgcaaggcgcatccgaagcgcgcatgagc
ccggaagacctgaacaagtggtacgtgcgcaacgaccagggtcagatggtgccgttcagt
gccttcgccagtggcgagtggacttatggcgcgccgaagctggcgcgctacaacggcgtc
tcggcagtggaaatcctcggtgccccggcccctggctacagcaccggcgatgccatggct
gccgtcgaggacatcgcctcgcagttgccccagggcgttggctactcctggaccggactt
tcctacgaggaacgcctggccggttcgcaaaccactgcactgttcgtgatctcggcaatc
gtcgtgttcctgtgcctggcagcgttgtacgagagctggtcgatccccttctcggtcatg
ctggtcgtgccgctggggatcatcggtgccttgctgttcaccgagctgcgcgggctgtcc
aacgacgtgttcttcaaggtcggcctgctcaccaccatcggcctctcggcgcgtaacgcg
atcctcatcgtcgagttcgccaaggcgcagtacgaacagggcatgaccttcgccgaggct
gccatcgaagcctgccgcatgcgtttgcgcccgatcatcatgacctcgctggcgttcatt
ctcggctgtctgccgctggccatcgccagtggcgctggcgctggcagcaagcacgccatc
ggcaccggggtgatcggcggcatgctcagtgcgatgatcctggcgatcttctggattccg
ttgttctacgtggtggtctgctcgctgttcgagaaaaagcgccccgagcaggccagtgaa
aaagagaaggaggtactgcaatga
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