Pseudomonas benzenivorans: SBP02_00465
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Entry
SBP02_00465 CDS
T10569
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pbez Pseudomonas benzenivorans
Pathway
pbez02025
Biofilm formation - Pseudomonas aeruginosa
pbez03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pbez00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
SBP02_00465 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
SBP02_00465 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pbez02044
]
SBP02_00465 (tssM)
Secretion system [BR:
pbez02044
]
Type VI secretion system
Imp/Vas secretion system core components
SBP02_00465 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
DUF4131
AAA_29
Motif
Other DBs
NCBI-ProteinID:
WPC05257
LinkDB
All DBs
Position
complement(97471..101010)
Genome browser
AA seq
1179 aa
AA seq
DB search
MKSFFGKLAAFFRKTWVWSLCLVLLLALLVWFVGPLLAVDDYRFWESASSRLLSISGLFL
LWGLAMVFASWKATARKKAEEDDAEAQERLRREGLIDEEQLELRNRFKDALRTLKRSSLY
RGRSEKWRNELPWYLLLGPQGSGKTSLLDFSGLDFPLNRGENQRLTKDVSGTRYADWYFA
DHAVLIDTCGRYLSQPDPQVDGRAWDCLLGLLRKRRARPLNGVLVNIPVEQLQGGSEVEL
ESLARQTRQRLHEIHQRLGANVPVYLVLSKADKVLGFDEFFDQLSREESEQVLGASFRKE
QDATDVAVVRQEFEELLRRLNSQVILRMHQERDTQRRGRILDFPHQLGQIGERLCLFVEL
AFSGNRYQRASQLRGFYLTSAPQLSDALDPSTSGIGRNLGLASSALPTFRSGRARFIHQL
LDRVIFPEAELAGLDQKEVRRIDWGQRAMYACAFAVLALFGALWASGFSSNHGRLEQLRE
IAQQLTRQHGAIAAQDDALRTLEALDSSHAATRVFPPRDELSLLQRGGLYQGEAVEPTLQ
RAYRGELETLLLPRVARQLEAQIRANLNDRERLLNSLRAYLMLNLEERRDAAFLQEWLAA
DWSLRYAGNSAAQHGLNQHFERLLAEPFAPYALNAPLVAQARQVLRSESLAAVVYRMLRE
QARSLPDYRLSQKLGPQAGLFVGSDYAIPGFYTQAGYQKLFVAQGGDLVRDILRDNWVLG
EGDSLSSNDLGRLLVEMEQLYFRDYANYWGEALAQLSLEPLASANQGALQLAGLTAANSP
LLQLLVEVRDNTRFKGLAEAADDAGAAAEGLKGAKGKLGKAAKLASAAAQKTQEALVKNL
PDTARKTLERRFEPLHRLLDDNGGAGAELAGSLQALDALQLQLAGLAHSSAPEQAAFELA
KARMGGRRDAINQVRSSAARLPQPIGNWLALLAEDSWMLVLNDAYHYLNQRYQNELYAAY
DGSLKQRYPFSAHSESDVAIADFREFFKGQGIAQRFFDGYLKPFVSGSAGQYRLRQVDGR
GLPLSREFLLQMSHAQTIRRSFFAEDPNEPKVLFKLEPYSLDSSLSRADFRFGSRQLEYR
HGPIVQTAFSWPAEADEGRTSLVVEELGGRRVGIEKNTGPWSLFRLLDLMKVDYHSGRDV
LMLKADLGGLRANYLLHSQRAPNPFDLGLLRSFKLPATL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaagagttttttcggcaaattagccgcatttttccgcaagacctgggtctggagcctg
tgcctggtgctgctcctggccctgctggtgtggttcgtcggtccgctgctggcggtcgat
gactacaggttctgggaatcggccagcagccgcctgctgagcatcagcgggctgttcctg
ctgtggggcctggccatggtcttcgccagctggaaggccacggcgcgcaagaaggccgag
gaggacgacgccgaggcccaggagcgcctgcgccgcgagggcctgatcgacgaggagcag
ctcgagctgcgcaaccgtttcaaggacgccctgcgcaccctcaagcgctccagcctgtac
cgcgggcgcagcgagaagtggcgcaacgaactgccctggtacctgctgctcggcccccag
ggcagcggcaagaccagcctgctggacttctccggcctggacttcccgctcaaccgcggt
gagaaccagcgcctgaccaaggacgtctccggcacccgctacgccgactggtacttcgcc
gaccacgcggtgctgatcgacacctgcggccgctacctgagccagcccgacccgcaggtc
gacgggcgcgcctgggactgcctgctcggcctgctgcgcaagcgccgcgcacggccgctc
aacggcgtgctggtgaacatcccggtcgagcaactgcagggcggcagcgaggtcgagctg
gagagcctggcgcggcagacccgccagcgcctgcacgagatccaccagcgcctgggcgcc
aacgtgccggtctacctggtgctgagcaaggccgacaaggtgctcggcttcgacgagttc
ttcgaccagctgtcgcgcgaggagagcgagcaggtgctcggcgccagcttccgcaaggaa
caggacgccaccgacgtcgccgtggtgcgccaggagttcgaggaactgctgcgccgcctc
aacagccaggtcatcctgcgcatgcaccaggagcgcgacacccagcgccgcgggcgcatc
ctcgacttcccgcaccagctcgggcagatcggcgagcgcctgtgcctgttcgtcgaactg
gccttcagcggcaaccgctaccagcgcgccagccagctgcgcggcttctacctgaccagc
gcgccgcaactgagcgacgcgctcgacccgagcaccagcggcatcggccgcaacctgggc
ctggccagcagcgccctgccgaccttccgcagcggccgcgcgcgcttcatccaccagctg
ctcgaccgggtgatcttccccgaggccgagctggccggcctggaccagaaggaggtgcgg
cgcatcgactggggccagcgcgccatgtacgcctgcgccttcgccgtgctggcgctgttc
ggcgcactctgggcgagcggtttctccagcaaccacgggcgcctggaacagctgcgcgaa
atcgcccagcagctgacccgtcagcacggcgccatcgccgcccaggacgacgccctgcgc
accctcgaggcgctggacagcagccacgccgccactcgggtgttcccgccgcgcgacgag
ctgtccctcctgcaacgcggaggcctgtaccagggcgaagcggtcgagccgaccctgcag
cgcgcctaccgcggcgagctggagaccctgctgctgccccgggtcgcccgccagctggag
gcgcagatccgcgccaacctgaacgaccgcgaacgcctgctcaacagcctgcgcgcctac
ctgatgctcaacctggaagagcgccgcgatgccgccttcctgcaggagtggctggcggcc
gactggtcgctgcgctacgccggcaacagcgccgcccagcacggcctcaaccagcacttc
gagcgcctgctggccgagcccttcgccccctacgcgctgaacgctccgctggtggcccaa
gcgcgccaggtgctgcgcagcgagtcgctggcggcggtggtctaccgcatgctccgcgag
caggcccgcagcctgccggactaccgcctgagccagaagctcgggccccaggccggactg
ttcgtcggcagcgactatgccatccccggcttctacacccaggccggctaccagaaactg
ttcgtcgcccagggcggcgacctggtgcgcgacatcctgcgcgacaactgggtactcggc
gagggcgacagcctgagcagcaacgacctcggccgcctgctggtggagatggagcagctg
tacttccgcgactacgccaactactggggcgaagccctggcccagctgagtctggagccg
ctggccagcgccaatcagggcgccctgcagttggccggactgaccgccgccaactcgccg
ctgctgcaactgctggtagaggtgcgcgacaacacccgcttcaagggcctggccgaagcc
gccgatgatgccggcgcggccgccgaaggactcaagggtgccaagggcaagctgggcaag
gccgccaagctggccagcgccgccgcgcagaagacccaggaggccctggtcaagaacctg
ccggacaccgcgcgcaagaccctggagcggcgtttcgagccgctgcaccgcctgctcgac
gacaacggcggtgccggcgccgagctggccggcagcctgcaggccctggacgccttgcag
ctgcagctggccggcctggcccactccagcgcgccggaacaggccgccttcgagctggcc
aaggcgcgcatgggcggccgccgcgacgccatcaaccaggtgcgcagcagcgccgcccgg
ctgccgcagccgatcggcaactggctggccctgctcgccgaggacagctggatgctggtg
ctcaacgacgcctaccactacctcaaccagcgctaccagaacgagctgtacgccgcctac
gacggctctctgaagcagcgttacccgttcagcgcgcacagcgagagcgacgtggcgatc
gccgatttccgcgagttcttcaagggccagggcatcgcccagcgcttcttcgacggctac
ctcaagcccttcgtcagcggcagcgccggccagtaccgcctgcgccaggtcgatggccgc
gggctgccgctgtcgcgcgagttcctgcttcagatgagccacgcgcagaccatccgccgc
agcttcttcgccgaagaccccaacgagcccaaggtgctgttcaagctcgagccctactcg
ctggattccagcctcagccgcgccgacttccgcttcggcagccgccagctggaataccgc
cacgggcccatcgtgcagaccgccttcagctggccggccgaggccgacgaaggccgcacc
agcctggtggtcgaggagctcggcgggcgccgcgtgggcatcgagaagaacaccggcccc
tggtcgctgttccgcctgctcgacctgatgaaggtggactaccacagcggtcgcgacgtg
ctgatgctcaaggccgatctgggcggcctgcgcgccaactacctgctgcacagccagcgc
gcgccgaaccccttcgacctcggcctgctgcgcagcttcaagctgccggcgacgctctga
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