Pseudomonas benzenivorans: SBP02_12710
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Entry
SBP02_12710 CDS
T10569
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbez Pseudomonas benzenivorans
Pathway
pbez03018
RNA degradation
Brite
Enzymes [BR:
pbez01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SBP02_12710 (rne)
Messenger RNA biogenesis [BR:
pbez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SBP02_12710 (rne)
Ribosome biogenesis [BR:
pbez03009
]
Prokaryotic type
rRNA processing factors
SBP02_12710 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WPC03641
LinkDB
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Position
2778064..2781096
Genome browser
AA seq
1010 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGARQQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKAPEGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQS
DLDYLLQLWSAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGAIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCDGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAQTSQSSYEMATAEVEEEKQAAATRTLVRQEAAIKAAPPRTAPTPTPVE
EAPVAAPAPASEPSLFRGLVKSLVSLFAGKEEEKPAVIEKKTSERPARSEERRSGRQQNR
SRGGRRDDERKPREERKPREDRAPREERQSREERAPREERQPREERQPRDAVEVREPQEV
RQSRPPREGQEGRRERKPREERQPRELRAPLDAPESSASEEPRAERERPQREPRQPRPPR
EERVAREEQSQAEEEVLNTEAQMADDDQEGSEGAERPRRRSRGQRRRSNRRERQRDASGN
LIEGGEEASETGDETAATPSATAAAVAVSEVASEAASGEAPVVEQAASETPREQDERPAT
QPAPAAEAEQSEEAAPASAESPAPAPEEAPSVSEEKPETTQEVAAAEPVAEPAPAAEAEP
APAPTPAPSAGGRAPNDPREVRRRQREAERLARDAAEAAAAAPQAEPAPVDAEPTSESSD
TAETKVEAVEQVADEAAEAPAKAAEQQPDHQAEDAETQQDEQAEKEKPHA
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgccctcgtcgac
ggccaacgcctgtacgatctggacatcgaatcgggcgcccgccagcagaagaaggccaac
atctacaaaggccgcatcacccgcgtcgaacccagcctggaagccgccttcgtcgacttc
ggctccgagcgccacggcttcctccccctcaaagaaatctcccgcgaatacttcagcaag
gcccccgagggtcgcgtcaacatcaaggacgtactcaaggaaggccaggaagtcatagtc
caggtcgagaaagaggaacgcggcaacaagggcgcagccctcaccaccttcatcagcctg
gccggccgttatctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgacgc
atcgagggcgaggagcgcaacgaactgcgcgaggccctcaacggtctcaacgccccggcc
gacatgggcctgatcgtccgcaccgccggcctcggccgctccagcgaagagatgcagtcg
gacctcgattacctgctgcagctgtggagcgcaatcaaggaagcctccctggaccgcgcc
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctggtcgacagcgtcgaggcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtc
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgaagtg
aagctgccgtccggcggcgccatcgtcatcgacccgaccgaggccctggtgtccatcgac
atcaactcggcacgcgccaccaagggcagcgacatcgaggagactgccctgcagaccaac
ctcgaagcggccgaagagatcgctcgccaactgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtcgaggagaaggtg
cgcgagtgcctggaagccgaccgcgcccgcgtccaggtcggccgcatctcgcgcttcggc
ctgctggagatgtcccgtcagcgcctgcgtccgtctctcggcgagaccagcggcatcgtc
tgcccgcgctgcgacggccagggcatcatccgcgacgtcgaatcgctgtcgctggcgatc
ctgcgcctgatcgaggaagaggccctgaaggaccgcaccgccgaggtccgcgcccaggtg
ccgatcccggtcgccgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgag
ctgcgcacccgtgcgcgtatcgtcattctgccgaacgatcacctggaaaccccgcacttc
gaggtgcagcgcctgcgtgacgacagcccggaagcgcaaaccagccagtccagctacgag
atggccacggcggaagtcgaggaagagaagcaggccgccgccacccgcaccctggtccgc
caggaagccgcgatcaaggccgcaccgccccgcaccgcaccgaccccgactccggtcgag
gaagcgccggttgccgctccggctcccgccagcgaacctagcctgttcaggggtctggtc
aagtcgctggtcagcctgttcgccggcaaggaagaggaaaagcccgcggtcatcgagaag
aagaccagcgaacgcccggcccgcagcgaagagcgtcgcagcggccgccagcagaaccgc
agccgcggcggtcgtcgcgacgatgagcgcaaaccgcgtgaagagcgcaagccgcgtgaa
gaccgtgcaccgcgcgaagaacgccagtcccgtgaagagcgcgcgccccgcgaggagcgt
cagccccgcgaagaacgccagccacgtgacgccgtagaggtacgcgagccccaggaagtg
cggcagtcgcgcccaccgcgggaagggcaggaaggtcgccgcgagcgcaagccgcgcgaa
gagcgccaaccgcgtgaactgcgcgcccctctcgacgcaccggaaagcagcgccagcgaa
gagccccgcgccgagcgcgagcgcccgcagcgcgaaccgcgccagccacgtccgccccgt
gaggagcgggtagcccgcgaagagcagagccaggccgaagaggaagtactgaacaccgag
gcccaaatggcagacgacgaccaggaaggcagcgaaggcgcagagcgcccacgtcgtcgc
tcccgtggccagcgtcgtcgcagcaatcgtcgcgaacgccagcgtgatgccagcggcaac
ctgatcgaaggcggcgaagaagccagcgagaccggtgacgaaactgccgccacgccgagc
gcgactgcggccgcagtggcggtcagcgaagtggccagcgaagccgcgagcggtgaagcg
ccagtcgtcgagcaggctgccagcgaaaccccgcgcgagcaggacgagcgcccggcaacc
caaccggcacctgccgcagaagccgagcagagcgaagaagccgctccggcctccgccgaa
agcccggcaccggctcccgaagaagcgccaagcgtgagcgaggagaagcccgaaaccacc
caggaggtcgccgcggcagaacccgtcgccgaacctgctccggccgccgaggcggaacct
gctccggccccgactcctgcaccaagcgccggtggccgcgcgccgaacgatccgcgcgaa
gtgcgtcgtcgccagcgtgaagccgaacgcctggctcgcgatgccgccgaagcggccgcc
gccgccccgcaggccgagccggccccggtcgatgccgagccgacgagcgagagcagcgac
accgccgagaccaaggtcgaagccgtcgaacaggttgcagacgaagccgcagaagctcct
gccaaggcagccgagcagcagcctgatcaccaggctgaagacgccgaaacgcagcaagat
gagcaggcggagaaagaaaagccgcacgcctga
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