Pseudomonas benzenivorans: SBP02_12895
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Entry
SBP02_12895 CDS
T10569
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbez Pseudomonas benzenivorans
Brite
KEGG Orthology (KO) [BR:
pbez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbez03032
]
SBP02_12895 (topA)
03400 DNA repair and recombination proteins [BR:
pbez03400
]
SBP02_12895 (topA)
Enzymes [BR:
pbez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SBP02_12895 (topA)
DNA replication proteins [BR:
pbez03032
]
Prokaryotic type
DNA Topoisomerases
SBP02_12895 (topA)
DNA repair and recombination proteins [BR:
pbez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SBP02_12895 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Ribosomal_L10
Motif
Other DBs
NCBI-ProteinID:
WPC03677
LinkDB
All DBs
Position
complement(2814430..2817039)
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASAAKEPAKRGKAAAGEA
PALSPKEKAKRQLFARMGVDPEQGWKAKYEILPGKEKVVDELRRLAKEADTIYLATDLDR
EGEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFAEPGELDINRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREKEIRAFVPEEYWEVHADLGTAKGDSV
RFEVARENGAAFKPLNEAQAMAALATLKASSYSVAKREDKPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMVRDFIENEFGKQYLPAKPNL
YSSKEGAQEAHEAIRPSDVNLKPTQLSGMERDAERLYELIWRQFVACQMPPAEYLSTTVT
VTAAQFELRAKGRILKFDGYTRAMPQQSKPGEDGVLPEMSQGESLELLKLDPSQHFTKPP
ARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGEIVTERLSESF
ANLMDYGFTAGMEEHLDDVAQGEREWKHLLDEFYGDFKGKLEVAEASDSGMRANLPTPTD
IACRECGRPMMIRTASTGVFLGCSGYSLPPKERCKSTINLIPGDEIAADDEGESESRVLL
GKHRCQKCGTAMDAYLIDETRKLHVCGNNPDCSGYEIEQGQYRIKGYEGPSLECDKCGSQ
MQLKTGRFGKFFGCTNSECKNTRKLLKSGEPAPPKMDAVKMPELKCEKVNDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLELIPHKDEIDPKYHFLLEAPKKDPEGRPAVIRYSRKTKE
QYVQSEVEGKPTGWRAFYDGGKWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtat
ctgggcagccagtacgtggtgaagtcgagcatcggccatatccgtgacctgcccaccagt
ggctcggcgagcgcggcgaaggagccggccaagcgcggcaaggctgcggcaggcgaagcg
ccggcgctgtcacccaaggaaaaggccaagcgccagctgttcgcccgcatgggtgtcgac
ccggaacagggctggaaggccaagtacgagatcctgcccggcaaggagaaggtggtcgat
gagctgcggcgcctggccaaggaagccgacaccatctatctggcgaccgacttggatcgc
gagggggaggccatcgcctggcacctgcgcgagtccatcggcggcgacgacagccgttac
aagcgcgtggtgttcaacgagatcaccaagaaggcgatccaggaggccttcgccgagccg
ggcgagctggatatcaaccgggtcaatgcccagcaggcgcggcgcttcctcgaccgcgtg
gtgggctatatggtttcgccgctgctgtgggcgaagatcgcccgcggcctgtccgccggc
cgcgtgcagtcggtggcggtgaagctggtggtcgagcgggagaaggagatccgcgccttc
gtcccggaagagtactgggaagtgcacgccgacctgggcacggccaagggcgacagcgtg
cgtttcgaggtggcccgggagaacggcgccgccttcaagccgttgaacgaagcccaggcc
atggcggccctggccacgctcaaggcgtccagctacagcgtcgccaagcgcgaggacaag
ccgaccagcagcaagccgtcggcgcccttcatcacctcgaccctgcagcaggcggcgagc
aatcgcctgggcttcggcgtgaagaagaccatgatgatggcccagcgcctctacgaggcc
ggctacatcacctatatgcgtaccgactcgaccaacctctcggccgatgccgtgagcatg
gtgcgtgactttatcgagaacgagttcggcaagcagtacctgccggccaagcccaacctc
tacagcagcaaggagggcgcccaggaagcgcacgaggcgattcgcccgtccgacgtcaac
ctcaagccgacccagctgtccggtatggagcgcgatgccgagcgtctctacgagctgatc
tggcgccagttcgtcgcctgtcagatgccgccggccgagtacctgtcgaccacggtcacc
gtgaccgcggcgcagttcgagctgcgggccaagggacgcatcctcaagttcgacggttac
acccgggcgatgccgcagcagagcaagccgggcgaggacggtgtgctgccggagatgagc
cagggcgagtcgctcgagctgctcaagctcgatcccagccagcacttcaccaagccgccg
gcacgttattccgaggccagcctggtcaaggagatggagaagcgcggcatcggccggcct
tcgacctacgcggcgatcatctcgaccatccaggaccgcggctacgtcgccctgcacaac
cgccgcttctactcggagaagatgggcgagatcgtcaccgagcgcctgtccgagagcttc
gccaatctgatggactacggcttcaccgccggtatggaggagcacctggacgatgtcgcc
cagggcgagcgcgagtggaagcatctgctcgacgaattctatggcgacttcaagggcaag
ctggaggtggccgaggccagcgacagcggcatgcgcgccaacctgccgaccccgaccgac
atcgcctgccgcgagtgtggtcgaccgatgatgattcgcaccgcctcgaccggcgtgttc
ctcggctgctcgggttacagcctgccgccgaaggagcgttgcaagtcgaccatcaacctg
atcccgggcgatgagatcgccgcggacgacgagggcgagtccgaatcccgggtgctgctc
ggcaagcatcgttgccagaagtgcggcaccgccatggatgcctacttgatcgacgagaca
cgcaaactgcatgtctgcggcaataatccggactgctcgggctatgagatcgagcagggc
cagtaccgcatcaagggctacgaggggccgagcctggagtgcgacaagtgcggcagccag
atgcagctcaagaccgggcgcttcggcaagttcttcggttgcaccaacagcgaatgcaag
aacacccgcaagctgctcaagagcggcgaaccggcaccgcccaagatggatgcggtgaag
atgccggagctcaagtgcgagaaggtcaacgacacctacgtgctgcgggacggggcgtcg
ggtctgttcctcgccgccagtcagtttccgaagaaccgcgagacccgcgcgccgctggtg
ctggagctgattccgcacaaggacgagatcgacccgaagtaccacttcctgctcgaggca
ccgaagaaagacccggaaggtcgccccgcggtgattcgttacagccgcaagaccaaggag
cagtacgtgcagtccgaggtcgagggcaagcccacgggctggcgtgccttctatgacggc
ggcaagtggaaagtggaagacaagcgctga
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