Pseudomonas benzenivorans: SBP02_17200
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Entry
SBP02_17200 CDS
T10569
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbez Pseudomonas benzenivorans
Pathway
pbez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBP02_17200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbez03019
]
SBP02_17200
Enzymes [BR:
pbez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SBP02_17200
Messenger RNA biogenesis [BR:
pbez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBP02_17200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WPC04487
UniProt:
A0ABZ0PTM4
LinkDB
All DBs
Position
complement(3726041..3727390)
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AA seq
449 aa
AA seq
DB search
MTFASLGLIEPLLRSLEGLDYQTPSPVQTQAIPPILKGRDLMAAAQTGTGKTAGFALPLL
QRLMMEGPVVAANSVRALVLVPTRELAEQVQQSFQAYGQHLPLRSYAVYGGVSINPQMMK
LRKGLDVLVATPGRLLDLYRQNAVKFNQLQTLVLDEADRMLDLGFARELDELFCALPRKR
QTLLFSATFSEAIRAMAKELLRDPLSIEVSPRNAAAKSVKQWLIPVDKKRKAELFLHLYR
EKRWSQVLVFAKTRKGVDELEQALLAEGIAADAIHGDKPQPTRLRALQRFKQGEVQVLVA
TDVAARGLDIVELPLVVNFDLPIVAEDYVHRIGRTGRAGATGQAVSLVCADEVEHLAAIE
TLINQVIQRIDEPDFIPDHRVPVTQAGGVVLKKSKKPKQKLIPGAGKAAGKGKIHLGNWF
EEDDTPKAKAVRKVPSFAGKPGKGGGRKP
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgcctccctcggcctgatcgagccgctgctgcgcagcctcgagggcctcgac
taccagaccccgtccccggtccagacccaggccatcccgccgatcctcaagggccgcgac
ctgatggccgcggcgcagaccggcaccggcaagaccgccggcttcgccctgccgctgctg
caacggctgatgatggaagggccggtggtggcggccaactcggtgcgcgccctggtgctg
gtgccgacccgcgagctggccgagcaggtgcagcagagtttccaggcctacggccagcac
ctgccgctgcgcagctacgcggtgtacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcctcgacgtgctggtggccacccccgggcggctgctcgacctgtaccgg
cagaacgcggtgaagttcaaccagctgcagaccctggtgctcgacgaggccgaccgcatg
ctcgacctgggcttcgcccgcgagctggacgagctgttctgcgccctgccgagaaagcgc
cagaccctgctgttctccgcgaccttctccgaagccatccgcgccatggccaaggagttg
ctgcgcgacccgctgtccatcgaggtcagcccgcgcaacgccgcggccaagagcgtcaag
cagtggctgatcccggtggacaagaagcgcaaggccgagctgttcctgcacctgtatcgg
gaaaaacgctggagccaggtgctggtgttcgccaagacccgcaagggcgtcgacgagctg
gagcaggccctgctggccgagggcatcgccgccgacgcgatccacggcgacaagccgcag
ccgacccgcctgcgcgccctgcaacgcttcaagcagggcgaggtgcaggtgctggtggcc
accgacgtggcggcccgtggcctggacattgtcgagctgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaggactacgtgcaccgcatcggccgcaccggccgcgccggcgcc
acggggcaggcggtgtcgctggtgtgcgccgacgaggtggagcacctggcggccatcgag
accctgatcaaccaggtgatccagcgcatcgacgaaccggacttcatccccgaccaccgc
gtgccggtcacccaggccggcggagtggtgctgaagaagtcgaagaagcccaagcagaaa
ctgatacccggcgcgggtaaggccgccggcaagggcaagatccacctcggcaactggttt
gaggaagacgacacgcccaaggccaaggcggtgcgcaaggtgccgagtttcgccggcaag
ccgggcaagggcggcgggcgtaagccgtag
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