Pseudomonas benzenivorans: SBP02_18330
Help
Entry
SBP02_18330 CDS
T10569
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pbez Pseudomonas benzenivorans
Pathway
pbez02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbez00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SBP02_18330 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbez03021
]
SBP02_18330 (rpoD)
Transcription machinery [BR:
pbez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SBP02_18330 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cortex-I_coil
TMPIT
Cwf_Cwc_15
ING
YL1
Motif
Other DBs
NCBI-ProteinID:
WPC04691
UniProt:
A0ABZ0PVB7
LinkDB
All DBs
Position
3931849..3933699
Genome browser
AA seq
616 aa
AA seq
DB search
MSVKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDSILAEYNRVTTEGGRLVEVLNGYIDPDDGSVPAEAA
APVPAKDSAAADDSDDDDDSDDDSGDDEDEGDGGPDPEEALRRFTAVAEQLEKANKALKK
HGRGSQQASDELRELADLFMPIKLVPKQYDALVDHVRSALERLRAQERAIMQLCVRDARM
PRADFLRLFPGNEVDPTWAEQLAKGKAKYAEAIGNLQGDIQRCQQKLVDLEAECDLTLAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtaaaagcgcaacagcaatctcgtttgaaagaattgatcagccgcggtcgtgag
cagggttacctgacttacgcggaggtcaatgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagc
gctccggatgcggacgccctgttgttggccgaagccgacaccgacgaagccgccgccgaa
gaggccgctgccgccctcgccgccgttgaaaccgatatcggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggcacagtggaactgctgacccgcgaaggcgagatcgag
atcgccaaacgcatcgaggaaggcatccgcgaagtcatgagcgccatcgctcacttcccg
ggcacagtcgacagcatcctcgccgaatacaaccgtgtaaccaccgagggcggccgcctg
gtcgaagtactcaacggctacatcgatccggacgacggcagcgtccccgccgaggctgcg
gcccccgtgcccgccaaggacagcgccgctgccgacgacagcgacgacgacgatgacagc
gacgacgatagcggcgacgacgaggacgaaggcgatggcggcccggatccggaagaagcc
ctgcgccgcttcaccgcggtcgccgagcagctggagaaagccaacaaggccctgaagaag
cacggccgaggcagccagcaggccagcgacgagctgagggagctggccgatctgttcatg
ccgatcaagctggtgcccaagcaatacgatgccctggtcgaccacgtgcgcagcgccctg
gagcgcctgcgcgcccaggagcgggccatcatgcagctgtgcgtgcgtgatgcgcgcatg
ccgcgcgccgacttcctgcgcctattccccggcaacgaggtcgacccgacctgggccgaa
cagctggccaagggcaaggccaagtacgccgaggccatcggcaacctgcaaggcgatatc
cagcgctgccagcagaaactggtcgacctggaagccgagtgcgacctgaccctggccgag
atcaaggacatcaaccggcgcatgtcgatcggcgaggccaaggcccgccgagcgaagaag
gagatggtcgaggccaacctgcgcctggtgatctccatcgccaagaagtacaccaaccgc
ggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggatccgtcag
gcaatcacccgctcgatcgccgaccaggcgcgcaccatccgcatcccggtgcacatgatc
gagacgatcaacaagctcaaccgcatctcccggcagatgctgcaggagatgggccgcgaa
ccgaccccggaagagctcggcgaacgcatggaaatgcccgaggacaagatccgcaaggtg
ctgaagatcgccaaggaaccgatctccatggagacgccgatcggcgacgacgaagattcg
cacctgggcgacttcatcgaggactcgaccatgcaatcgccgatcgacgtggcgaccgtg
gaaagcctcaaggaagccacccgcgaagtgctggccggactcaccgcccgcgaggccaag
gtcctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaagtcggc
aagcagttcgatgtcacccgcgagcggatccgccagatcgaggccaaggcgttgcgcaag
ctgcgccacccgacgcgcagcgagcacctgcgctccttcctcgacgagtga
DBGET
integrated database retrieval system
