Pseudomonas benzenivorans: SBP02_19215
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Entry
SBP02_19215 CDS
T10569
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbez Pseudomonas benzenivorans
Pathway
pbez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBP02_19215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbez03019
]
SBP02_19215
Enzymes [BR:
pbez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SBP02_19215
Messenger RNA biogenesis [BR:
pbez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBP02_19215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WPC04860
LinkDB
All DBs
Position
4153355..4155160
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AA seq
601 aa
AA seq
DB search
MSFASLGLSEALVRAVESVGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDREHRHGPKQPRVLVLTPTRELAAQVHDSFKAYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLQASHKRALL
AHLVTAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANKV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQRIPDGDLMGFDASKVEAERPEVREPQKPRPPRGANAGGERHGSGRKDKGK
DGGKAKSQPARGQQQPRAARPVAAAIPALPPDRAPDEFRDDEIDNFGNRVDYVSPHQNKQ
QNRGRRPGAAAASTPGQAPRGQGKGPRNGGGQSQGQGKRQGGQGRNGNGRARPPRDSSIA
LNRDELPRQEPVVKSARDKQPVIVHKNSRSERFPTPEQLDELANSRPRGEKPALLTRNRD
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctttagtccgtgcggtcgaatccgtcggc
tacacccagcccactccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggtggcggcccagacgggtacaggtaagacaggcggttttgccctgccgatcctc
gagcgactgttccccaacggtcacccggatcgcgaacaccgccacggccccaagcagccg
cgcgtgctggtattgacccccacccgcgaactggccgcccaggtccatgacagcttcaag
gcctacgcccgcgatctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccccaggtgcaggccctggccaagggcgtcgacgtcctggtggcctgccccggccgcctg
ctcgacctggccaaccagaaggccatcgacctctcccacgtggaaatcctggtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgatgtgaagaaggtcctcgccaag
ctgcccgcgcagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctggccggcaagctgctgcacaaccccgaacgcatcgaggtgacgccgccgaacaccacg
gtcgagcgcatcgagcagcgcgtgttccgcctgcaggccagccacaagcgcgccctgctc
gcccacctggtcaccgccggcgcctgggagcaggtgctggtcttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctcgacaagcacggcctgccggccgtggcgatccac
ggtaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggcgaacaaggtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagctgccccac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtgcaccgcatcggccgtacc
ggccgcgccggccgcagcggcgaggcgatctcgctggtcgccccggacgaagagaagctg
ctgaaaagcatcgagcggatgaccaagcagaggatccccgacggcgacctgatgggcttc
gacgccagcaaggtcgaggccgagcggccggaagtgcgcgaaccgcagaagccccgcccg
ccccgcggcgccaatgccggcggcgagcgccacggcagcgggcgcaaggacaagggcaag
gacggcggcaaggccaagtcgcagccggctcgcggccagcaacagccccgcgcggcgcgc
ccggtcgcggctgccatccccgccttacctcccgaccgcgcaccggacgagttccgcgac
gacgagatcgacaacttcggcaaccgggtcgactacgtcagcccgcaccagaacaaacag
cagaatcgcggtcgccgtccgggcgcggcggctgccagcacacccggccaggcgccccgc
ggccagggcaagggaccgcgcaacggcggcggccagagccaggggcagggcaagcgccag
ggcggccagggccgcaacggcaacggccgcgcccgcccgccccgcgacagcagcatcgcc
ctcaaccgcgacgagctgccgcgccaggagccggtggtgaagagcgcacgcgacaagcaa
ccggtgatcgtgcacaagaactcgcgcagcgagcgcttccccacacccgagcagctcgac
gaactggcgaacagccgcccacgcggcgagaagccggccctgctgacgcgcaaccgcgac
agctaa
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